PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID XP_016467597.1
Organism
Nicotiana tabacum
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Nicotianoideae; Nicotianeae; Nicotiana
Family M-type_MADS
Protein Properties Length: 118aa    MW: 13118.7 Da    PI: 5.7486
Description M-type_MADS family protein
Gene Model
Gene Model ID Type Source Coding Sequence
XP_016467597.1genomeNCBIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1SRF-TF32.88.7e-111657142
                    S---SHHHHHHHHHHHHHHHHHHHHHHHHHHT-EEEEEEE-T CS
          SRF-TF  1 krienksnrqvtfskRrngilKKAeELSvLCdaevaviifss 42
                    +rie    r++tfskRr g+ KKA+ L   C++++ + +fs+
  XP_016467597.1 16 ERIEGPEDRYTTFSKRRSGLYKKANNLVEECGVDIGIALFSP 57
                    68999999***************************9999997 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SMARTSM004321.0E-9867IPR002100Transcription factor, MADS-box
PROSITE profilePS5006617.521868IPR002100Transcription factor, MADS-box
SuperFamilySSF554558.89E-16978IPR002100Transcription factor, MADS-box
CDDcd001203.38E-18967No hitNo description
PRINTSPR004047.9E-91030IPR002100Transcription factor, MADS-box
PfamPF003198.7E-161764IPR002100Transcription factor, MADS-box
PRINTSPR004047.9E-93045IPR002100Transcription factor, MADS-box
PRINTSPR004047.9E-94566IPR002100Transcription factor, MADS-box
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 118 aa     Download sequence    Send to blast
MDKEKKTAGR QSIPLERIEG PEDRYTTFSK RRSGLYKKAN NLVEECGVDI GIALFSPAVN  60
PFSFFHPTPN LILDHVENPN IELSESTKLA AYARNNVNQT NNTINEIVSQ PEIPSSGS
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_016467597.11e-82PREDICTED: agamous-like MADS-box protein AGL61
TrEMBLA0A1S3ZTA32e-81A0A1S3ZTA3_TOBAC; agamous-like MADS-box protein AGL61
STRINGXP_009595185.16e-66(Nicotiana tomentosiformis)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
AsteridsOGEA38220138
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G24840.11e-22AGAMOUS-like 61