PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID XP_016465560.1
Organism
Nicotiana tabacum
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Nicotianoideae; Nicotianeae; Nicotiana
Family ARR-B
Protein Properties Length: 595aa    MW: 66039.9 Da    PI: 5.8383
Description ARR-B family protein
Gene Model
Gene Model ID Type Source Coding Sequence
XP_016465560.1genomeNCBIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1G2-like76.92.5e-24165218155
         G2-like   1 kprlrWtpeLHerFveaveqLGGsekAtPktilelmkvkgLtlehvkSHLQkYRl 55 
                     k++++Wt+ LH++F+ea++ + G +kA+Pk+il+ mkv+gLt+e+v+SHLQkYR+
  XP_016465560.1 165 KAKVVWTSSLHNKFLEAIRDI-GFDKAVPKKILDQMKVPGLTRENVASHLQKYRI 218
                     6799*****************.********************************6 PP
2Response_reg40.71.3e-1438329109
                     ESSHHHHHHHHHHHH..ESEEEEESSCTTSEHHHHHHHHHHHTTTSEEEEEESTTTHHHHHHHHHTTESEEEESS--HHHHHH CS
    Response_reg  29 addgeealellkekd..pDlillDiempgmdGlellkeireeepklpiivvtahgeeedalealkaGakdflsKpfdpeelvk 109
                     ++++ +al +l+ k   +Dl+++D+ mp+m+G+el + i+ e  +lp+++++a ++e ++l+ l+ Ga  f+ Kp++ ++l++
  XP_016465560.1   3 VKHPMDALSILRIKGgsFDLVVVDVHMPDMNGFELQQVITDEF-ELPVVLMSADDKEGTILKGLDGGAA-FFLKPISVDDLRD 83 
                     56677788877544445**********************9999.9********************9886.778****999986 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5011024.743189IPR001789Signal transduction response regulator, receiver domain
Gene3DG3DSA:3.40.50.23005.7E-18296No hitNo description
SuperFamilySSF521724.27E-17389IPR011006CheY-like superfamily
PfamPF000723.9E-11683IPR001789Signal transduction response regulator, receiver domain
CDDcd001562.69E-141286No hitNo description
PROSITE profilePS5129410.901162221IPR017930Myb domain
SuperFamilySSF466891.88E-17163222IPR009057Homeodomain-like
Gene3DG3DSA:1.10.10.602.4E-24164222IPR009057Homeodomain-like
TIGRFAMsTIGR015576.2E-24165218IPR006447Myb domain, plants
PfamPF002496.8E-6168217IPR001005SANT/Myb domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0000160Biological Processphosphorelay signal transduction system
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 595 aa     Download sequence    Send to blast
MTVKHPMDAL SILRIKGGSF DLVVVDVHMP DMNGFELQQV ITDEFELPVV LMSADDKEGT  60
ILKGLDGGAA FFLKPISVDD LRDLWQYTLL QKKKGKRVVL EEIDCLEKSS NCNKKSLHEV  120
GESASSINEN YYQHIKKEKS KRKPARTQRN ADKDNSGNSA ALFKKAKVVW TSSLHNKFLE  180
AIRDIGFDKA VPKKILDQMK VPGLTRENVA SHLQKYRIFL ERVSDACCRI QAADTNLAIK  240
AVQSTFASGM LSQEKIGLQK QFSENTTNPR SLIHTANNGS SSFRTQQTRQ AIPLGYEQAQ  300
LFLNEGILGN ITHSNEIPLY KANQLTSTMK ANNYQTGTSA YEDISSQLMN GTTSTQVRRM  360
LSRVPANRLS DRNLLALGTN GITKHATLNG NLNFLHDGFA DDQCGTNFTQ NNDADEASTL  420
FAGLMNFIGK SQHDSEQCLA QEASSSVGFD GEKQCSAILS DHIDEDTSMQ LPSFVNDVCR  480
GQEVDATLNP VCNFSEFHNI NATQQSRGIG DLSVPFVNQG NVQPHQQSGE DYLQWFGQIP  540
FKQQEHIGHS EPAEDGMSQL HNVFSYPTEQ CKNEQFLELV LASSPYEGDQ NPDGL
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1irz_A3e-19164224464ARR10-B
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAC1494882e-36AC149488.1 Solanum demissum chromosome 11 clone PGEC542, complete sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_016465557.10.0PREDICTED: two-component response regulator ORR24-like isoform X1
RefseqXP_016465558.10.0PREDICTED: two-component response regulator ORR24-like isoform X1
TrEMBLA0A1S3ZMG40.0A0A1S3ZMG4_TOBAC; two-component response regulator ORR24-like isoform X1
STRINGXP_009771678.10.0(Nicotiana sylvestris)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G16110.13e-48response regulator 2