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PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | XP_016456162.1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Nicotianoideae; Nicotianeae; Nicotiana
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Family | NAC | ||||||||
Protein Properties | Length: 441aa MW: 49674 Da PI: 4.7447 | ||||||||
Description | NAC family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | NAM | 104.7 | 1.2e-32 | 56 | 195 | 1 | 128 |
NAM 1 lppGfrFhPtdeelvveyLkkkvegkk.....leleevikevd....iykvePwdLpkkvkaeekewyfFskrdkkyatgkrknratk.....sg 81 lp+G++F+Ptd+e++++ L k g++ + +e+i++vd i++++P++Lp vk++ + +fF+++ k+y+tg+rk+r+++ + XP_016456162.1 56 LPRGVKFDPTDQEIIWHLLGKVEVGSRsshpfI--DEFIPTVDeddgICYTHPQNLP-GVKQDGSVSHFFHRAIKAYNTGTRKRRKIHgdnfgDV 147 799************776665544444565332..334666544556**********.677888899******************8655555588 PP NAM 82 yWkatgkdkevlskkgelvglkktLvfy..kgrapkgektdWvmheyrl 128 +W++tg++k+v+ +g + g+kk++v+y + k+ekt+Wvmh+y+l XP_016456162.1 148 RWHKTGRTKPVIL-DGIQRGCKKIMVLYisPVKGGKAEKTNWVMHQYHL 195 8************.99************6545777888*********98 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
SuperFamily | SSF101941 | 1.96E-38 | 42 | 214 | IPR003441 | NAC domain |
PROSITE profile | PS51005 | 30.831 | 56 | 214 | IPR003441 | NAC domain |
Pfam | PF02365 | 8.1E-14 | 57 | 195 | IPR003441 | NAC domain |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0000077 | Biological Process | DNA damage checkpoint | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0010332 | Biological Process | response to gamma radiation | ||||
GO:0040020 | Biological Process | regulation of meiotic nuclear division | ||||
GO:0003677 | Molecular Function | DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 441 aa Download sequence Send to blast |
MARPSWLVDS KRIATKIKSA SGDPGAVNWK SNPTKACPKC QFIIDNNDVS NDWPGLPRGV 60 KFDPTDQEII WHLLGKVEVG SRSSHPFIDE FIPTVDEDDG ICYTHPQNLP GVKQDGSVSH 120 FFHRAIKAYN TGTRKRRKIH GDNFGDVRWH KTGRTKPVIL DGIQRGCKKI MVLYISPVKG 180 GKAEKTNWVM HQYHLGTGED EREGEYVVSK VFYQQQQQVK QGDKIEQELP EDADYLVAKV 240 DPHTPKSVTP EPPRGERISS SMDARQQIAA SSISPTTQYH DVDYTEDDMG ALPYQTENQD 300 QIIENQIDED GTKVDNETGD DPKWWDSESQ YLLDSQQLVE GLSLCDDLLA SQSPNRDEHD 360 NDTDKNKEKK CKPSLADYAQ LGPEDLKKDL EECQHLVLDP ANIDMDTPPD FRLSQLEFGS 420 QDSYIAWGGS KFGFDSGEHV G |
Functional Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | Transcription factor regulating the transcriptional activation response to gamma irradiation (PubMed:19549833). Required for stem-cell death induced by UVB or by gamma irradiation (PubMed:20634150). Not required for ATM activation, but participates in pathways governed by both ATM and ATR sensor kinases (PubMed:19549833). Involved in DNA damage response (DDR) system that regulates cell cycle arrest (PubMed:24399300). Functional homolog of animal p53 (PubMed:24736489). Regulates SMR5 and SMR7 transcription (PubMed:24399300). Regulates DNA repair and cytokinin signaling separately and plays a key role in controlling lateral root formation under genotoxic stress. {ECO:0000269|PubMed:19549833, ECO:0000269|PubMed:20634150, ECO:0000269|PubMed:24399300, ECO:0000305|PubMed:24736489}. |
Regulation -- Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | INDUCTION: Not induced by zeocin or ionizing radiation treatment. {ECO:0000269|PubMed:23907539}. |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | HG975444 | 1e-171 | HG975444.1 Solanum pennellii chromosome ch05, complete genome. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_009770386.1 | 0.0 | PREDICTED: NAC domain-containing protein 8 isoform X2 | ||||
Refseq | XP_016456162.1 | 0.0 | PREDICTED: NAC domain-containing protein 8-like isoform X3 | ||||
Swissprot | Q6NQK2 | 0.0 | NAC8_ARATH; SUPPRESSOR OF GAMMA RESPONSE 1 | ||||
TrEMBL | A0A1S3YW31 | 0.0 | A0A1S3YW31_TOBAC; NAC domain-containing protein 8-like isoform X3 | ||||
TrEMBL | A0A1U7VZJ3 | 0.0 | A0A1U7VZJ3_NICSY; NAC domain-containing protein 8 isoform X2 | ||||
STRING | XP_009770385.1 | 0.0 | (Nicotiana sylvestris) |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT1G25580.1 | 1e-174 | NAC family protein |