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PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | XP_016456160.1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Nicotianoideae; Nicotianeae; Nicotiana
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Family | NAC | ||||||||
Protein Properties | Length: 468aa MW: 52634.5 Da PI: 4.9018 | ||||||||
Description | NAC family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | NAM | 104.5 | 1.4e-32 | 83 | 222 | 1 | 128 |
NAM 1 lppGfrFhPtdeelvveyLkkkvegkk.....leleevikevd....iykvePwdLpkkvkaeekewyfFskrdkkyatgkrknratk.....sg 81 lp+G++F+Ptd+e++++ L k g++ + +e+i++vd i++++P++Lp vk++ + +fF+++ k+y+tg+rk+r+++ + XP_016456160.1 83 LPRGVKFDPTDQEIIWHLLGKVEVGSRsshpfI--DEFIPTVDeddgICYTHPQNLP-GVKQDGSVSHFFHRAIKAYNTGTRKRRKIHgdnfgDV 174 799************776665544444565332..334666544556**********.677888899******************8655555588 PP NAM 82 yWkatgkdkevlskkgelvglkktLvfy..kgrapkgektdWvmheyrl 128 +W++tg++k+v+ +g + g+kk++v+y + k+ekt+Wvmh+y+l XP_016456160.1 175 RWHKTGRTKPVIL-DGIQRGCKKIMVLYisPVKGGKAEKTNWVMHQYHL 222 8************.99************6545777888*********98 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
SuperFamily | SSF101941 | 2.35E-38 | 69 | 241 | IPR003441 | NAC domain |
PROSITE profile | PS51005 | 30.831 | 83 | 241 | IPR003441 | NAC domain |
Pfam | PF02365 | 9.1E-14 | 84 | 222 | IPR003441 | NAC domain |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0000077 | Biological Process | DNA damage checkpoint | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0010332 | Biological Process | response to gamma radiation | ||||
GO:0040020 | Biological Process | regulation of meiotic nuclear division | ||||
GO:0003677 | Molecular Function | DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 468 aa Download sequence Send to blast |
MGFVGRVRSG SLLVIGFSKS RNEVLILMNR PSWLVDSKRI ATKIKSASGD PGAVNWKSNP 60 TKACPKCQFI IDNNDVSNDW PGLPRGVKFD PTDQEIIWHL LGKVEVGSRS SHPFIDEFIP 120 TVDEDDGICY THPQNLPGVK QDGSVSHFFH RAIKAYNTGT RKRRKIHGDN FGDVRWHKTG 180 RTKPVILDGI QRGCKKIMVL YISPVKGGKA EKTNWVMHQY HLGTGEDERE GEYVVSKVFY 240 QQQQQVKQGD KIEQELPEDA DYLVAKVDPH TPKSVTPEPP RGERISSSMD ARQQIAASSI 300 SPTTQYHDVD YTEDDMGALP YQTENQDQII ENQIDEDGTK VDNETGDDPK WWDSESQYLL 360 DSQQLVEGLS LCDDLLASQS PNRDEHDNDT DKNKEKKCKP SLADYAQLGP EDLKKDLEEC 420 QHLVLDPANI DMDTPPDFRL SQLEFGSQDS YIAWGGSKFG FDSGEHVG |
Functional Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | Transcription factor regulating the transcriptional activation response to gamma irradiation (PubMed:19549833). Required for stem-cell death induced by UVB or by gamma irradiation (PubMed:20634150). Not required for ATM activation, but participates in pathways governed by both ATM and ATR sensor kinases (PubMed:19549833). Involved in DNA damage response (DDR) system that regulates cell cycle arrest (PubMed:24399300). Functional homolog of animal p53 (PubMed:24736489). Regulates SMR5 and SMR7 transcription (PubMed:24399300). Regulates DNA repair and cytokinin signaling separately and plays a key role in controlling lateral root formation under genotoxic stress. {ECO:0000269|PubMed:19549833, ECO:0000269|PubMed:20634150, ECO:0000269|PubMed:24399300, ECO:0000305|PubMed:24736489}. |
Regulation -- Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | INDUCTION: Not induced by zeocin or ionizing radiation treatment. {ECO:0000269|PubMed:23907539}. |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | HG975444 | 1e-171 | HG975444.1 Solanum pennellii chromosome ch05, complete genome. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_016456160.1 | 0.0 | PREDICTED: NAC domain-containing protein 8-like isoform X1 | ||||
Swissprot | Q6NQK2 | 0.0 | NAC8_ARATH; SUPPRESSOR OF GAMMA RESPONSE 1 | ||||
TrEMBL | A0A1S3YVW0 | 0.0 | A0A1S3YVW0_TOBAC; NAC domain-containing protein 8-like isoform X1 | ||||
STRING | XP_009770385.1 | 0.0 | (Nicotiana sylvestris) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Asterids | OGEA8162 | 24 | 30 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT1G25580.1 | 1e-173 | NAC family protein |