PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID XP_016454217.1
Organism
Nicotiana tabacum
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Nicotianoideae; Nicotianeae; Nicotiana
Family FAR1
Protein Properties Length: 587aa    MW: 67699.1 Da    PI: 5.3402
Description FAR1 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
XP_016454217.1genomeNCBIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1FAR1691.1e-21129212189
            FAR1   1 kfYneYAkevGFsvrkskskkskrngeitkrtfvCskegkreeekkktekerrtraetrtgCkaklkvkkekdgkwevtkleleHnHel 89 
                     ++Yn YAke+GF +r+++s ++++++e   + ++C++eg+++ ++ +     ++r+etrtgC a +++++ ++++w+v++++leHnH +
  XP_016454217.1 129 NYYNCYAKELGFAIRVKSSWTKRNSKEKRGAVLCCNCEGFKTMKEAN-----SRRKETRTGCLAIIRLRLVESSRWRVDEVKLEHNHLF 212
                     69****************************************99888.....8999*******************************77 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PfamPF031014.7E-19129212IPR004330FAR1 DNA binding domain
PfamPF105511.3E-25332418IPR018289MULE transposase domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0008270Molecular Functionzinc ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 587 aa     Download sequence    Send to blast
MLQMEEGLGT SEQLPEDEGS DNEVDSEEAF DITCNGDQVL NVEADELEAT TGQILEFESH  60
ETEKSCERVL DFESSDPKDN SHQLLEFHSN GLGGGDTTII DDHTGSSPGK FYPPPVVGME  120
FESYEDAYNY YNCYAKELGF AIRVKSSWTK RNSKEKRGAV LCCNCEGFKT MKEANSRRKE  180
TRTGCLAIIR LRLVESSRWR VDEVKLEHNH LFDPERVQNS KSHKKMDAGV KRKLEPAVDV  240
EVQTIKLYRT PAVETLGYGS SDERAFSGQV DGSTHLKLKE GDIQVIYNFF CRVQLTKPNF  300
FYIMDLNDEG YLKNVFWIDP RSRAAYAYFG DVVVVDTTCV SKKYDIPLLA FFGLNHHKQT  360
LLLGCGLLAD ESFETYVWLL RAWLSCMSGR PPQTIITDRC MALQNAISEV FPRAQHRLNL  420
SIILGSIFNT VGQVGESEVF REVLYNTVYN SLKVDEFEVA WEEMVHQFGF RGYGWLQSLY  480
EDRERWAPIY MKDTFFAGIS IDQPGEFMSP FFDGYVHKHT NLKDFFDIYD FVLQKMRQKE  540
VHCDFESREF SPVLRTRYST SSRQWTDHHI YCYRTRGSGR HRGCKKF
Functional Description ? help Back to Top
Source Description
UniProtPutative transcription activator involved in regulating light control of development. May have a role in controlling flowering time. {ECO:0000269|PubMed:15591448}.
Regulation -- Description ? help Back to Top
Source Description
UniProtINDUCTION: Up-regulated in hypocotyls by far-red light treatment. {ECO:0000269|PubMed:15591448}.
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankHG9754450.0HG975445.1 Solanum pennellii chromosome ch06, complete genome.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_016454217.10.0PREDICTED: protein FAR1-RELATED SEQUENCE 8-like isoform X3
SwissprotQ9S7931e-175FRS8_ARATH; Protein FAR1-RELATED SEQUENCE 8
TrEMBLA0A1S3YQ910.0A0A1S3YQ91_TOBAC; protein FAR1-RELATED SEQUENCE 8-like isoform X3
STRINGXP_009786841.10.0(Nicotiana sylvestris)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G80010.11e-178FAR1-related sequence 8
Publications ? help Back to Top
  1. Joly-Lopez Z, et al.
    Abiotic Stress Phenotypes Are Associated with Conserved Genes Derived from Transposable Elements.
    Front Plant Sci, 2017. 8: p. 2027
    [PMID:29250089]