PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | XP_016452130.1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Nicotianoideae; Nicotianeae; Nicotiana
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Family | B3 | ||||||||
Protein Properties | Length: 375aa MW: 43659.2 Da PI: 5.0069 | ||||||||
Description | B3 family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | B3 | 55 | 1.5e-17 | 11 | 97 | 1 | 95 |
EEEE-..-HHHHTT-EE--HHH.HTT.---..--SEEEEEETTS-EEEEEE..EEETTEEEE-TTHHHHHHHHT--TT-EEEEEE-SSSEE..EEE CS B3 1 ffkvltpsdvlksgrlvlpkkfaeeh.ggkkeesktltledesgrsWevkliyrkksgryvltkGWkeFvkangLkegDfvvFkldgrsefelvvk 95 ffk + p++ +s+ l +p f+ e+ +gk +k ++l+d+ g++W + + kk++ ++++GW +F ++n L+ gDf++F +dg+ f +k XP_016452130.1 11 FFKLFYPEN--SSQKLKIPTAFT-EYkNGK--LPKRVSLRDRFGNVWPIGM--AKKGRYLYFQDGWVKFIEDNSLEFGDFLIFDYDGNGVF--DFK 97 777775544..44559******9.563555..8889***************..9**999***************************98777..444 PP | |||||||
2 | B3 | 32.9 | 1.2e-10 | 278 | 356 | 10 | 90 |
HHHTT-EE--HHH.HTT---..--SEEEEEETTS-EEEEEE..EEETTEEEE-TTHHHHHHHHT--TT-EEEEEE-SS.SEE CS B3 10 vlksgrlvlpkkfaeehggkkeesktltledesgrsWevkliyrkksgryvltkGWkeFvkangLkegDfvvFkldgr.sef 90 + ++++l++p + +++++++ + ++ ++d++gr++e +++++k + r++l+kGW++ ++ n ++ D ++ ++++ s++ XP_016452130.1 278 AKRRDQLYVPVDVVRDYNLE--LPPKMFFRDSEGRKFETEVNIWKDG-RIWLKKGWRKICRWNLVEKEDRCICEFMRGkSNE 356 567899***********776..6679***************999985.89*********************99988763443 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
Gene3D | G3DSA:2.40.330.10 | 3.2E-20 | 7 | 103 | IPR015300 | DNA-binding pseudobarrel domain |
PROSITE profile | PS50863 | 14.113 | 9 | 102 | IPR003340 | B3 DNA binding domain |
SuperFamily | SSF101936 | 7.65E-21 | 10 | 104 | IPR015300 | DNA-binding pseudobarrel domain |
SMART | SM01019 | 9.0E-16 | 11 | 102 | IPR003340 | B3 DNA binding domain |
CDD | cd10017 | 1.11E-12 | 11 | 99 | No hit | No description |
Pfam | PF02362 | 5.7E-15 | 11 | 94 | IPR003340 | B3 DNA binding domain |
SuperFamily | SSF101936 | 5.69E-16 | 265 | 355 | IPR015300 | DNA-binding pseudobarrel domain |
Gene3D | G3DSA:2.40.330.10 | 3.0E-16 | 265 | 363 | IPR015300 | DNA-binding pseudobarrel domain |
PROSITE profile | PS50863 | 9.305 | 269 | 366 | IPR003340 | B3 DNA binding domain |
CDD | cd10017 | 1.10E-6 | 270 | 362 | No hit | No description |
SMART | SM01019 | 0.0025 | 272 | 368 | IPR003340 | B3 DNA binding domain |
Pfam | PF02362 | 9.1E-9 | 279 | 355 | IPR003340 | B3 DNA binding domain |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0003677 | Molecular Function | DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 375 aa Download sequence Send to blast |
MDDAKKMEKG FFKLFYPENS SQKLKIPTAF TEYKNGKLPK RVSLRDRFGN VWPIGMAKKG 60 RYLYFQDGWV KFIEDNSLEF GDFLIFDYDG NGVFDFKLLG KTACEKKGAG VAVKVEEEEM 120 INIAHQKSEG QKGKKHLASD SSSSSSSFDG DEDEEYMEEE EEDEDEEYEE EEEETKEKAI 180 VICKKKAPCS KGSYVEEEKD DDEEAEESVE KEEEEEEEEE KNEKAKMFKK KAPCSKGVFK 240 RATTIKKRDV PDQYGAEIFR SGRATQPKNP YFVAKIRAKR RDQLYVPVDV VRDYNLELPP 300 KMFFRDSEGR KFETEVNIWK DGRIWLKKGW RKICRWNLVE KEDRCICEFM RGKSNEILYL 360 QVTVVKAGGV SHPSK |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
1yel_A | 7e-13 | 4 | 104 | 4 | 104 | At1g16640 |
Search in ModeBase |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_009769340.1 | 0.0 | PREDICTED: B3 domain-containing protein At4g34400-like isoform X1 | ||||
Refseq | XP_016452130.1 | 0.0 | PREDICTED: B3 domain-containing protein At4g34400-like | ||||
TrEMBL | A0A1S3YJ50 | 0.0 | A0A1S3YJ50_TOBAC; B3 domain-containing protein At4g34400-like | ||||
TrEMBL | A0A1U7W4Z2 | 0.0 | A0A1U7W4Z2_NICSY; B3 domain-containing protein At4g34400-like isoform X1 | ||||
STRING | XP_009769340.1 | 0.0 | (Nicotiana sylvestris) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Asterids | OGEA1091 | 22 | 64 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT5G66980.1 | 7e-17 | B3 family protein |