![]() |
PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
|
Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
---|---|---|---|---|---|---|---|---|---|
TF ID | XP_016449238.1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Nicotianoideae; Nicotianeae; Nicotiana
|
||||||||
Family | ERF | ||||||||
Protein Properties | Length: 362aa MW: 39495 Da PI: 5.5796 | ||||||||
Description | ERF family protein | ||||||||
Gene Model |
|
Signature Domain? help Back to Top | |||||||
---|---|---|---|---|---|---|---|
No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | AP2 | 63.5 | 4.6e-20 | 182 | 231 | 2 | 55 |
AP2 2 gykGVrwdkkrgrWvAeIrdpsengkrkrfslgkfgtaeeAakaaiaarkkleg 55 y+GVr+++ +g+WvAeIr p++ r+r +lg+f+taeeAa a+++a+ l+g XP_016449238.1 182 LYRGVRQRH-WGKWVAEIRLPKN---RTRLWLGTFDTAEEAALAYDKAAYMLRG 231 59******9.**********965...5**********************99987 PP |
Protein Features ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Database | Entry ID | E-value | Start | End | InterPro ID | Description |
CDD | cd00018 | 1.15E-32 | 181 | 241 | No hit | No description |
Gene3D | G3DSA:3.30.730.10 | 5.1E-32 | 182 | 240 | IPR001471 | AP2/ERF domain |
SMART | SM00380 | 4.9E-37 | 182 | 245 | IPR001471 | AP2/ERF domain |
SuperFamily | SSF54171 | 5.49E-23 | 182 | 240 | IPR016177 | DNA-binding domain |
PROSITE profile | PS51032 | 22.721 | 182 | 239 | IPR001471 | AP2/ERF domain |
PRINTS | PR00367 | 3.5E-11 | 183 | 194 | IPR001471 | AP2/ERF domain |
Pfam | PF00847 | 6.7E-14 | 183 | 231 | IPR001471 | AP2/ERF domain |
PRINTS | PR00367 | 3.5E-11 | 205 | 221 | IPR001471 | AP2/ERF domain |
Gene Ontology ? help Back to Top | ||||||
---|---|---|---|---|---|---|
GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0003677 | Molecular Function | DNA binding | ||||
GO:0003700 | Molecular Function | transcription factor activity, sequence-specific DNA binding |
Sequence ? help Back to Top |
---|
Protein Sequence Length: 362 aa Download sequence Send to blast |
MAAAMDFWNS TSVDVHSTSE PIITSGGELM EALEPFMKSA SSSSSSSFPP SISTPFPSDF 60 HSFPSFPPSP IPTPTSTISY PCTSFYQTAP QPMGSDSCST STTENTQIFS TGFSGYGMEQ 120 PGSIGLNQLT PAQIQQIQAQ INFQTQQQQQ MMFHHHASTM NLLGPKPVQM KQSGSPPKPT 180 KLYRGVRQRH WGKWVAEIRL PKNRTRLWLG TFDTAEEAAL AYDKAAYMLR GDFARLNFPH 240 LRHNGSLIGG EFGEYNPLHS SVDAKLKEIC ESLAQGKSID SKKKKTSKGS SAAAVVKMEE 300 EESKVAEGGS ESDGSGSGSG GSSPVTDLTF PEFTEEESTW DMCSENMLLQ KYPSHEIDWA 360 SL |
3D Structure ? help Back to Top | ||||||
---|---|---|---|---|---|---|
PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
1gcc_A | 1e-21 | 181 | 239 | 1 | 60 | ETHYLENE RESPONSIVE ELEMENT BINDING FACTOR 1 |
Search in ModeBase |
Functional Description ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Source | Description | |||||
UniProt | Probably acts as a transcriptional activator. Binds to the GCC-box pathogenesis-related promoter element. May be involved in the regulation of gene expression by stress factors and by components of stress signal transduction pathways (By similarity). {ECO:0000250}. |
Regulation -- PlantRegMap ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Nucleotide ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Source | Hit ID | E-value | Description | |||
GenBank | JX682668 | 0.0 | JX682668.1 Nicotiana tabacum cultivar NC89 ERF transcription factor 8 (ERF8) mRNA, complete cds. |
Annotation -- Protein ? help Back to Top | |||||||
---|---|---|---|---|---|---|---|
Source | Hit ID | E-value | Description | ||||
Refseq | XP_016449238.1 | 0.0 | PREDICTED: ethylene-responsive transcription factor RAP2-4-like | ||||
Swissprot | Q8H1E4 | 5e-90 | RAP24_ARATH; Ethylene-responsive transcription factor RAP2-4 | ||||
TrEMBL | A0A1S3YB50 | 0.0 | A0A1S3YB50_TOBAC; ethylene-responsive transcription factor RAP2-4-like | ||||
STRING | XP_009779133.1 | 0.0 | (Nicotiana sylvestris) |
Orthologous Group ? help Back to Top | |||
---|---|---|---|
Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Asterids | OGEA1610 | 24 | 71 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Hit ID | E-value | Description | ||||
AT1G78080.1 | 9e-60 | related to AP2 4 |
Publications ? help Back to Top | |||
---|---|---|---|
|