PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
|
Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
---|---|---|---|---|---|---|---|---|---|
TF ID | XP_016444423.1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Nicotianoideae; Nicotianeae; Nicotiana
|
||||||||
Family | C2H2 | ||||||||
Protein Properties | Length: 417aa MW: 46497.5 Da PI: 5.1984 | ||||||||
Description | C2H2 family protein | ||||||||
Gene Model |
|
Signature Domain? help Back to Top | |||||||
---|---|---|---|---|---|---|---|
No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | zf-C2H2 | 11.4 | 0.001 | 236 | 258 | 1 | 23 |
EEETTTTEEESSHHHHHHHHHHT CS zf-C2H2 1 ykCpdCgksFsrksnLkrHirtH 23 y+C+ C+++F++ L H +H XP_016444423.1 236 YECKTCNRTFPSFQALGGHRASH 258 99**********99999998887 PP | |||||||
2 | zf-C2H2 | 13.6 | 0.0002 | 318 | 340 | 1 | 23 |
EEETTTTEEESSHHHHHHHHHHT CS zf-C2H2 1 ykCpdCgksFsrksnLkrHirtH 23 ++C++Cg F++ L H+r+H XP_016444423.1 318 HECSYCGAEFTSGQALGGHMRRH 340 78********************9 PP |
Protein Features ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Database | Entry ID | E-value | Start | End | InterPro ID | Description |
SuperFamily | SSF57667 | 1.36E-8 | 235 | 258 | No hit | No description |
Pfam | PF13912 | 4.1E-13 | 235 | 260 | IPR007087 | Zinc finger, C2H2 |
PROSITE profile | PS50157 | 10.658 | 236 | 263 | IPR007087 | Zinc finger, C2H2 |
SMART | SM00355 | 0.052 | 236 | 258 | IPR015880 | Zinc finger, C2H2-like |
PROSITE pattern | PS00028 | 0 | 238 | 258 | IPR007087 | Zinc finger, C2H2 |
SuperFamily | SSF57667 | 1.36E-8 | 313 | 340 | No hit | No description |
PROSITE profile | PS50157 | 9.806 | 318 | 340 | IPR007087 | Zinc finger, C2H2 |
Pfam | PF13912 | 2.6E-12 | 318 | 342 | IPR007087 | Zinc finger, C2H2 |
SMART | SM00355 | 0.0098 | 318 | 340 | IPR015880 | Zinc finger, C2H2-like |
PROSITE pattern | PS00028 | 0 | 320 | 340 | IPR007087 | Zinc finger, C2H2 |
Gene Ontology ? help Back to Top | ||||||
---|---|---|---|---|---|---|
GO Term | GO Category | GO Description | ||||
GO:0046872 | Molecular Function | metal ion binding |
Sequence ? help Back to Top |
---|
Protein Sequence Length: 417 aa Download sequence Send to blast |
MDALEEVDVG CPNKDLFHIV KGKRTKRLRL SGVPCNNNNT NNIEDGSDNE EGIACKNNNN 60 NIEDGSGNGE GHVVACRNNY NNNIEDGKDN GEGITCKNNN NNIEDGNGNG EGIVAWKNNN 120 NDIEDGSGNG EAVAYNNNTT NNNNDNNYSN RSSTNSAEIF INTFTDEEEE TAESLILMSK 180 LSDDHPRPPR FTLPPDNKVD FFNDNLRLYQ TKFNSKRYIE TSTNSANGTK AGIYVYECKT 240 CNRTFPSFQA LGGHRASHKK PKTILTTELS NKKSYFDFSD EDDYQELSPS TTTLYKNNKN 300 VTKTLPNSSN KFSSPRIHEC SYCGAEFTSG QALGGHMRRH RRGVNVYSPL HLSNLSPATS 360 IDQEFGNNIV KKPRDGLSLD LNIPVSDDHI DPKFPVVSLN QQDQEQTQRQ QLVDCHY |
Regulation -- PlantRegMap ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Nucleotide ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Source | Hit ID | E-value | Description | |||
GenBank | AB000452 | 0.0 | AB000452.1 Petunia x hybrida mRNA for PEThy;ZPT2-6, complete cds. |
Annotation -- Protein ? help Back to Top | |||||||
---|---|---|---|---|---|---|---|
Source | Hit ID | E-value | Description | ||||
Refseq | XP_016444423.1 | 0.0 | PREDICTED: GATA zinc finger domain-containing protein 15-like | ||||
TrEMBL | A0A1S3XWV5 | 0.0 | A0A1S3XWV5_TOBAC; GATA zinc finger domain-containing protein 15-like | ||||
STRING | XP_009587785.1 | 0.0 | (Nicotiana tomentosiformis) |
Orthologous Group ? help Back to Top | |||
---|---|---|---|
Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Asterids | OGEA4015 | 23 | 43 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Hit ID | E-value | Description | ||||
AT5G04390.1 | 4e-40 | C2H2 family protein |