PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Protein Features |

Gene Ontology |

Regulation |

Orthologous Group |

Basic Information? help Back to Top

TF ID

XP_016439637.1

Organism

Nicotiana tabacum

Taxonomic ID

4097

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Nicotianoideae; Nicotianeae; Nicotiana

Family

M-type_MADS

Protein Properties

Length: 229aa MW: 26105.8 Da PI: 8.6385

Description

M-type_MADS family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
XP_016439637.1	genome	NCBI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	SRF-TF	52.4	6.9e-17	15	61	1	47
S---SHHHHHHHHHHHHHHHHHHHHHHHHHHT-EEEEEEE-TTSEEE CS SRF-TF 1 krienksnrqvtfskRrngilKKAeELSvLCdaevaviifsstgkly 47 k+ien+ r+vtfskRr g+ K A+EL LC++++ +++fs+tgk + XP_016439637.1 15 KKIENEDDRYVTFSKRRSGLYKQASELVKLCNIDIGIVLFSPTGKPF 61 68******************************************965 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
SMART	SM00432	6.1E-20	7	66	IPR002100	Transcription factor, MADS-box
PROSITE profile	PS50066	22.385	7	67	IPR002100	Transcription factor, MADS-box
SuperFamily	SSF55455	1.96E-22	8	78	IPR002100	Transcription factor, MADS-box
PRINTS	PR00404	6.0E-16	9	29	IPR002100	Transcription factor, MADS-box
Pfam	PF00319	2.0E-21	16	63	IPR002100	Transcription factor, MADS-box
PRINTS	PR00404	6.0E-16	29	44	IPR002100	Transcription factor, MADS-box
PRINTS	PR00404	6.0E-16	44	65	IPR002100	Transcription factor, MADS-box

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0003677	Molecular Function	DNA binding
GO:0046983	Molecular Function	protein dimerization activity

Sequence ? help Back to Top
Protein Sequence Length: 229 aa Download sequence Send to blast
MEGKKTRGRQ SIPMKKIENE DDRYVTFSKR RSGLYKQASE LVKLCNIDIG IVLFSPTGKP 60 FSFFHPTSEA IIDRFLNPNM QLSESTRLVA AHARHKVNQL NNRRELFDNI KEATSAESLL 120 LDNMKENSER YRWESIEQFN ADEVKKTRSK IGLRGSSCSS SITASAWPGS GTAWRGWGVL 180 KICRIDRLLL GLGIDIPWHE DWIEMSLASM REQEDGVVEP HLVQVVAHC

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_016439637.1	1e-171	PREDICTED: agamous-like MADS-box protein AGL29
TrEMBL	A0A1S3XIY5	1e-170	A0A1S3XIY5_TOBAC; agamous-like MADS-box protein AGL29
STRING	XP_009765100.1	1e-104	(Nicotiana sylvestris)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Asterids	OGEA382	20	138

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT2G24840.1	5e-28	AGAMOUS-like 61