PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | XP_016439186.1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Nicotianoideae; Nicotianeae; Nicotiana
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Family | B3 | ||||||||
Protein Properties | Length: 454aa MW: 50854.1 Da PI: 7.3012 | ||||||||
Description | B3 family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | B3 | 53 | 6.3e-17 | 11 | 87 | 17 | 99 |
E--HHH.HTT---..--SEEEEEETTS-EEEEEE..EEETTEEEE-TTHHHHHHHHT--TT-EEEEEE-SSSEE..EEEEE-S CS B3 17 vlpkkfaeehggkkeesktltledesgrsWevkliyrkksgryvltkGWkeFvkangLkegDfvvFkldgrsefelvvkvfrk 99 ++p +fa+ ++ ++++ led+sg++W+v + r ++g+ +++GW F +++gLk gDf+vF++++ + f v++f + XP_016439186.1 11 YFPPRFARLVSHL--TNQETYLEDSSGQKWKVGI--RIHKGSLAIREGWHAFSSEHGLKIGDFLVFHYIQGQHF--IVQIFGT 87 5788999777655..45589**************..999999***************************97777..9999976 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
SMART | SM01019 | 2.1E-12 | 1 | 88 | IPR003340 | B3 DNA binding domain |
PROSITE profile | PS50863 | 13.93 | 1 | 88 | IPR003340 | B3 DNA binding domain |
CDD | cd10017 | 8.05E-17 | 5 | 85 | No hit | No description |
Gene3D | G3DSA:2.40.330.10 | 5.4E-19 | 6 | 90 | IPR015300 | DNA-binding pseudobarrel domain |
SuperFamily | SSF101936 | 7.46E-20 | 8 | 90 | IPR015300 | DNA-binding pseudobarrel domain |
Pfam | PF02362 | 1.2E-14 | 11 | 86 | IPR003340 | B3 DNA binding domain |
PROSITE profile | PS50863 | 8.374 | 351 | 449 | IPR003340 | B3 DNA binding domain |
SMART | SM01019 | 0.39 | 353 | 447 | IPR003340 | B3 DNA binding domain |
Gene3D | G3DSA:2.40.330.10 | 6.7E-10 | 361 | 445 | IPR015300 | DNA-binding pseudobarrel domain |
SuperFamily | SSF101936 | 7.85E-10 | 364 | 445 | IPR015300 | DNA-binding pseudobarrel domain |
CDD | cd10017 | 2.39E-7 | 386 | 445 | No hit | No description |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0003677 | Molecular Function | DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 454 aa Download sequence Send to blast |
PFTFYVQSFQ YFPPRFARLV SHLTNQETYL EDSSGQKWKV GIRIHKGSLA IREGWHAFSS 60 EHGLKIGDFL VFHYIQGQHF IVQIFGTSGC QKISFDNGTR TGKKRRRTNC KATSQDELLP 120 EIDINSRKKW NSTHSDTAVP ESEMADHEAV TTTFASTIDA DTGILEIVHE AEAISNILQG 180 EDGPRNHVST NSISQRESSL VDEVPVEMEL LSFQAPVHFL DIGITQTEKI SEPVNDILLL 240 GQKDENVHNM GLISSTSSAE KSGSHLVLPS NKESRCSNQA TREKSNKASH IDKRELKEMA 300 AKTDCSAEKL NGKEPKLIEK DGQGFLRAVS GNNKVIKSEP ADSGDTSFPD AGNFSCLLRV 360 DGRNFLELPQ SWPQVLTGRK KLEHSTIYLQ GPDDRPWPVT YHERAGTKVL ASRWALFTAA 420 YGIKPGDECR FQVLNLSERR FKVHIGHKLR CYSN |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_016439186.1 | 0.0 | PREDICTED: B3 domain-containing protein Os02g0598200-like, partial | ||||
TrEMBL | A0A1S3XGX9 | 0.0 | A0A1S3XGX9_TOBAC; B3 domain-containing protein Os02g0598200-like | ||||
STRING | XP_009774954.1 | 0.0 | (Nicotiana sylvestris) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Asterids | OGEA2210 | 23 | 52 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT5G66980.1 | 4e-10 | B3 family protein |