PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | XP_016438325.1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Nicotianoideae; Nicotianeae; Nicotiana
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Family | SRS | ||||||||
Protein Properties | Length: 376aa MW: 41493.2 Da PI: 6.7769 | ||||||||
Description | SRS family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | DUF702 | 24 | 1.1e-07 | 52 | 86 | 5 | 39 |
DUF702 5 tasCqdCGnqakkdCaheRCRtCCksrgfdCathv 39 + +C CGn a+ C ++ C+ CC C+ hv XP_016438325.1 52 KPKCIKCGNVARSRCPFQSCKSCCAKAQNPCHIHV 86 568*******************************9 PP |
Sequence ? help Back to Top |
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Protein Sequence Length: 376 aa Download sequence Send to blast |
MAGTASSPAL SNHSADSAPS PASAPAATTV TAAVVSSHPT INASKNLRGL NKPKCIKCGN 60 VARSRCPFQS CKSCCAKAQN PCHIHVLKGG STLPDKLPSS GSPVVDQQST EASHSGSSHR 120 GAASLRQLST NFAQFNNLQT PLRSRKPLTR KDAQLINEWR FMKLKEYRDS NIAAENEAFD 180 RYMQNVGLLE EVFAVNSAED ERNEDGSTED DNEATINRLK LQLRSDPTRI ENTRKRMQYI 240 VDQGLRKLRK LESGDNATDL SDLDALGKKK KAKSAEAEWV VSFTDLIDKL NKARNEEDLK 300 ACWEMKSQLF NQNKKEKQAE SDNAEASIEQ SSEASVLPTM PSGYSPPKWF STSTIDDEEL 360 RRLNAQFDSL EDIEEL |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | KT779526 | 0.0 | KT779526.1 UNVERIFIED: Capsicum annuum hypothetical protein-like mRNA, complete sequence. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_016438325.1 | 0.0 | PREDICTED: uncharacterized protein LOC107764281 isoform X1 | ||||
TrEMBL | A0A1S3XEN5 | 0.0 | A0A1S3XEN5_TOBAC; uncharacterized protein LOC107764281 isoform X1 | ||||
STRING | XP_009592240.1 | 0.0 | (Nicotiana tomentosiformis) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Asterids | OGEA8544 | 11 | 14 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT1G32730.1 | 8e-87 |