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PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | XP_016433398.1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Nicotianoideae; Nicotianeae; Nicotiana
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Family | ERF | ||||||||
Protein Properties | Length: 247aa MW: 27645.7 Da PI: 5.4908 | ||||||||
Description | ERF family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | AP2 | 62.2 | 1.1e-19 | 74 | 123 | 3 | 56 |
AP2 3 ykGVrwdkkrgrWvAeIrdpsengkrkrfslgkfgtaeeAakaaiaarkklege 56 y+G+r+++ +g+W+AeIrdp++ r++lg+f taeeAa+a+++ ++k++ge XP_016433398.1 74 YRGIRQRP-WGKWAAEIRDPRK---GVRVWLGTFNTAEEAARAYDKEARKIRGE 123 9*******.**********954...4**************************97 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
SMART | SM00380 | 1.2E-30 | 73 | 135 | IPR001471 | AP2/ERF domain |
PROSITE profile | PS51032 | 21.944 | 73 | 131 | IPR001471 | AP2/ERF domain |
SuperFamily | SSF54171 | 1.57E-19 | 73 | 125 | IPR016177 | DNA-binding domain |
Gene3D | G3DSA:3.30.730.10 | 2.4E-27 | 73 | 124 | IPR001471 | AP2/ERF domain |
CDD | cd00018 | 1.09E-28 | 74 | 125 | No hit | No description |
PRINTS | PR00367 | 5.6E-12 | 74 | 85 | IPR001471 | AP2/ERF domain |
Pfam | PF00847 | 2.2E-12 | 74 | 123 | IPR001471 | AP2/ERF domain |
PRINTS | PR00367 | 5.6E-12 | 96 | 112 | IPR001471 | AP2/ERF domain |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0005634 | Cellular Component | nucleus | ||||
GO:0003677 | Molecular Function | DNA binding | ||||
GO:0003700 | Molecular Function | transcription factor activity, sequence-specific DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 247 aa Download sequence Send to blast |
MCGGAILADL IPRRDRCASS TDLWPNSADF WPSSSFAKPI MSNQNVTATP KRAQPPTGNE 60 QIQKTKKKQR KNLYRGIRQR PWGKWAAEIR DPRKGVRVWL GTFNTAEEAA RAYDKEARKI 120 RGENRYSTAY ESYDTSYNHE SNNCDGSFCS LENQNTEPVL EYPLAYKNSS GSVYNGSEGQ 180 KAENEVEKLT EELMAYESLM KFYEIPYVDG QSVAATVNPA GEAVVGGGSM DLWTFDDVSP 240 TLPITQL |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
1gcc_A | 3e-18 | 74 | 122 | 3 | 52 | ETHYLENE RESPONSIVE ELEMENT BINDING FACTOR 1 |
5wx9_A | 5e-18 | 74 | 123 | 15 | 65 | Ethylene-responsive transcription factor ERF096 |
Search in ModeBase |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | KJ001148 | 0.0 | KJ001148.1 Nicotiana tabacum ethylene response factor 2 mRNA, complete cds. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | NP_001311590.1 | 0.0 | ethylene-responsive transcription factor ERF071-like | ||||
TrEMBL | W8SVK8 | 0.0 | W8SVK8_TOBAC; Ethylene response factor 2 | ||||
STRING | XP_009774382.1 | 0.0 | (Nicotiana sylvestris) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Asterids | OGEA7118 | 23 | 29 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT2G47520.1 | 4e-40 | ERF family protein |