PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID XP_015900649.1
Organism
Ziziphus jujuba
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Rhamnaceae; Paliureae; Ziziphus
Family TALE
Protein Properties Length: 803aa    MW: 88210.1 Da    PI: 7.232
Description TALE family protein
Gene Model
Gene Model ID Type Source Coding Sequence
XP_015900649.1genomeNCBIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Homeobox28.52.6e-096036401954
                     HHH..SSS--HHHHHHHHHHCTS-HHHHHHHHHHHHHH CS
        Homeobox  19 Fek..nrypsaeereeLAkklgLterqVkvWFqNrRak 54 
                     Fe   ++yp+ +++  LA+++gL+ +qV++WF N R +
  XP_015900649.1 603 FEHflHPYPTDTDKHMLATQTGLSRNQVSNWFINARVR 640
                     664459******************************87 PP
2BELL105.63.2e-34458526472
            BELL   4 elqkkkakLlslleeVdkrYkqyveqlqtvissFeavaglgsakpYtslAlkaiSrhFrcLkdaiaeqi 72 
                     e q+kkakLl ++eeV++rYkqy++q+q+v+ssFe+vagl +++pY+ lAlk ++rhFrcLk+ i++q+
  XP_015900649.1 458 EYQQKKAKLLYMQEEVCRRYKQYHQQMQMVVSSFETVAGLSASTPYICLALKMVARHFRCLKNVITDQL 526
                     89****************************************************************997 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SMARTSM005741.1E-44354524IPR006563POX domain
PfamPF075261.2E-41359523IPR006563POX domain
PROSITE profilePS5007111.839581644IPR001356Homeobox domain
SMARTSM003894.1E-8584648IPR001356Homeobox domain
CDDcd000861.88E-11584645No hitNo description
SuperFamilySSF466891.07E-16586650IPR009057Homeodomain-like
Gene3DG3DSA:1.10.10.602.1E-27587648IPR009057Homeodomain-like
PfamPF059203.8E-18601640IPR008422Homeobox KN domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0010076Biological Processmaintenance of floral meristem identity
GO:0010077Biological Processmaintenance of inflorescence meristem identity
GO:0010223Biological Processsecondary shoot formation
GO:0010228Biological Processvegetative to reproductive phase transition of meristem
GO:0010229Biological Processinflorescence development
GO:0048645Biological Processorgan formation
GO:0080006Biological Processinternode patterning
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 803 aa     Download sequence    Send to blast
MEMSGFRPEP HVAQQSRRDK LRVQQTSPPT SHHNLDTTFP NHLEQFTVHS GLNSQDIVQV  60
RNVRNANLLY DPTMFPSEML DFSRNANNVL HAHDRPDTET CQDLSAAAAQ PDRSSMAVSH  120
DHHPHGFGSW RSFNNNNPQQ SLDNWVVNYG TSGGNSVGSE SGQNNPMFVR ELNANINPLK  180
SSCYSGYQDL QYHNTLEDVV TASASRNQAG IEISSLANEL VLLPNFVNQS TGLRFDNAAA  240
AVDHHQWSEG ELGFNIGKKI DEEYRNVVTD SNPPQGLSLS LSSNPPSKLP ATHFDGCGGG  300
SEDLHSRSMK SGYLCSIPKP SIISKAGGGK SLQDIVGISS ANAYRNTGPL GPFTGYATIL  360
KSSKFLKPAQ QLLDEFCCIT VGSKRFETGG DLSERISREV SVSASASASV DAMDAIETEI  420
VGKGNNSCAS SSTFYGSNEF SGDGTGVGSI SSESFRPEYQ QKKAKLLYMQ EEVCRRYKQY  480
HQQMQMVVSS FETVAGLSAS TPYICLALKM VARHFRCLKN VITDQLKHIR KALGEDLSSP  540
TTGTSSSKGE ANTARLKYME QSFQKHKSSG VGVGFAEPQQ QHIWRPQRGL PERSVAILRA  600
WLFEHFLHPY PTDTDKHMLA TQTGLSRNQV SNWFINARVR VWKPMVEEIH MLETKGLAEV  660
GQSPGKRDGN SATEGTSRQS NDQTSNRLVT NMMPKKQLEC SSTLSSVGIM DCSSGEQVNN  720
QEKRSRLECQ DPTSVAGALA GFVPYQRSGL EVGGLGAVSL TLGLRHGVES AQQQHNHHQQ  780
QLRQQEDQLR RQLGGQMIHD FVG
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
4xrs_A1e-15590647158Homeobox protein Meis1
4xrs_B1e-15590647158Homeobox protein Meis1
Search in ModeBase
Cis-element ? help Back to Top
SourceLink
PlantRegMapXP_015900649.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_015900648.10.0BEL1-like homeodomain protein 10
RefseqXP_015900649.10.0BEL1-like homeodomain protein 10
RefseqXP_015900650.10.0BEL1-like homeodomain protein 10
RefseqXP_024922956.10.0BEL1-like homeodomain protein 10
TrEMBLM5W2N40.0M5W2N4_PRUPE; Uncharacterized protein
STRINGXP_008226055.10.0(Prunus mume)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G27990.14e-91BEL1-like homeodomain 8