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PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | XP_015900648.1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Rhamnaceae; Paliureae; Ziziphus
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Family | TALE | ||||||||
Protein Properties | Length: 803aa MW: 88210.1 Da PI: 7.232 | ||||||||
Description | TALE family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | Homeobox | 28.5 | 2.6e-09 | 603 | 640 | 19 | 54 |
HHH..SSS--HHHHHHHHHHCTS-HHHHHHHHHHHHHH CS Homeobox 19 Fek..nrypsaeereeLAkklgLterqVkvWFqNrRak 54 Fe ++yp+ +++ LA+++gL+ +qV++WF N R + XP_015900648.1 603 FEHflHPYPTDTDKHMLATQTGLSRNQVSNWFINARVR 640 664459******************************87 PP | |||||||
2 | BELL | 105.6 | 3.2e-34 | 458 | 526 | 4 | 72 |
BELL 4 elqkkkakLlslleeVdkrYkqyveqlqtvissFeavaglgsakpYtslAlkaiSrhFrcLkdaiaeqi 72 e q+kkakLl ++eeV++rYkqy++q+q+v+ssFe+vagl +++pY+ lAlk ++rhFrcLk+ i++q+ XP_015900648.1 458 EYQQKKAKLLYMQEEVCRRYKQYHQQMQMVVSSFETVAGLSASTPYICLALKMVARHFRCLKNVITDQL 526 89****************************************************************997 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
SMART | SM00574 | 1.1E-44 | 354 | 524 | IPR006563 | POX domain |
Pfam | PF07526 | 1.2E-41 | 359 | 523 | IPR006563 | POX domain |
PROSITE profile | PS50071 | 11.839 | 581 | 644 | IPR001356 | Homeobox domain |
SMART | SM00389 | 4.1E-8 | 584 | 648 | IPR001356 | Homeobox domain |
CDD | cd00086 | 1.88E-11 | 584 | 645 | No hit | No description |
SuperFamily | SSF46689 | 1.07E-16 | 586 | 650 | IPR009057 | Homeodomain-like |
Gene3D | G3DSA:1.10.10.60 | 2.1E-27 | 587 | 648 | IPR009057 | Homeodomain-like |
Pfam | PF05920 | 3.8E-18 | 601 | 640 | IPR008422 | Homeobox KN domain |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0010076 | Biological Process | maintenance of floral meristem identity | ||||
GO:0010077 | Biological Process | maintenance of inflorescence meristem identity | ||||
GO:0010223 | Biological Process | secondary shoot formation | ||||
GO:0010228 | Biological Process | vegetative to reproductive phase transition of meristem | ||||
GO:0010229 | Biological Process | inflorescence development | ||||
GO:0048645 | Biological Process | organ formation | ||||
GO:0080006 | Biological Process | internode patterning | ||||
GO:0003677 | Molecular Function | DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 803 aa Download sequence Send to blast |
MEMSGFRPEP HVAQQSRRDK LRVQQTSPPT SHHNLDTTFP NHLEQFTVHS GLNSQDIVQV 60 RNVRNANLLY DPTMFPSEML DFSRNANNVL HAHDRPDTET CQDLSAAAAQ PDRSSMAVSH 120 DHHPHGFGSW RSFNNNNPQQ SLDNWVVNYG TSGGNSVGSE SGQNNPMFVR ELNANINPLK 180 SSCYSGYQDL QYHNTLEDVV TASASRNQAG IEISSLANEL VLLPNFVNQS TGLRFDNAAA 240 AVDHHQWSEG ELGFNIGKKI DEEYRNVVTD SNPPQGLSLS LSSNPPSKLP ATHFDGCGGG 300 SEDLHSRSMK SGYLCSIPKP SIISKAGGGK SLQDIVGISS ANAYRNTGPL GPFTGYATIL 360 KSSKFLKPAQ QLLDEFCCIT VGSKRFETGG DLSERISREV SVSASASASV DAMDAIETEI 420 VGKGNNSCAS SSTFYGSNEF SGDGTGVGSI SSESFRPEYQ QKKAKLLYMQ EEVCRRYKQY 480 HQQMQMVVSS FETVAGLSAS TPYICLALKM VARHFRCLKN VITDQLKHIR KALGEDLSSP 540 TTGTSSSKGE ANTARLKYME QSFQKHKSSG VGVGFAEPQQ QHIWRPQRGL PERSVAILRA 600 WLFEHFLHPY PTDTDKHMLA TQTGLSRNQV SNWFINARVR VWKPMVEEIH MLETKGLAEV 660 GQSPGKRDGN SATEGTSRQS NDQTSNRLVT NMMPKKQLEC SSTLSSVGIM DCSSGEQVNN 720 QEKRSRLECQ DPTSVAGALA GFVPYQRSGL EVGGLGAVSL TLGLRHGVES AQQQHNHHQQ 780 QLRQQEDQLR RQLGGQMIHD FVG |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
4xrs_A | 1e-15 | 590 | 647 | 1 | 58 | Homeobox protein Meis1 |
4xrs_B | 1e-15 | 590 | 647 | 1 | 58 | Homeobox protein Meis1 |
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Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | XP_015900648.1 |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_015900648.1 | 0.0 | BEL1-like homeodomain protein 10 | ||||
Refseq | XP_015900649.1 | 0.0 | BEL1-like homeodomain protein 10 | ||||
Refseq | XP_015900650.1 | 0.0 | BEL1-like homeodomain protein 10 | ||||
Refseq | XP_024922956.1 | 0.0 | BEL1-like homeodomain protein 10 | ||||
TrEMBL | M5W2N4 | 0.0 | M5W2N4_PRUPE; Uncharacterized protein | ||||
STRING | XP_008226055.1 | 0.0 | (Prunus mume) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Fabids | OGEF3481 | 32 | 57 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT2G27990.1 | 4e-91 | BEL1-like homeodomain 8 |