PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID XP_015899566.1
Organism
Ziziphus jujuba
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Rhamnaceae; Paliureae; Ziziphus
Family WRKY
Protein Properties Length: 355aa    MW: 38920.6 Da    PI: 6.2515
Description WRKY family protein
Gene Model
Gene Model ID Type Source Coding Sequence
XP_015899566.1genomeNCBIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1WRKY96.51.8e-30170228259
                     --SS-EEEEEEE--TT-SS-EEEEEE-ST.T---EEEEEE-SSSTTEEEEEEES--SS- CS
            WRKY   2 dDgynWrKYGqKevkgsefprsYYrCtsa.gCpvkkkversaedpkvveitYegeHnhe 59 
                     +D ++WrKYGqK++kgs++pr+YYrC+s+ gC ++k+ver+++dp ++++tY+ eHnh+
  XP_015899566.1 170 SDIWAWRKYGQKPIKGSPYPRGYYRCSSSkGCLARKQVERNRSDPGMFIVTYTAEHNHP 228
                     79*************************998****************************7 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:2.20.25.801.9E-30160230IPR003657WRKY domain
PROSITE profilePS5081134.842164230IPR003657WRKY domain
SuperFamilySSF1182905.36E-26167230IPR003657WRKY domain
SMARTSM007741.5E-36169229IPR003657WRKY domain
PfamPF031062.4E-25171228IPR003657WRKY domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0010150Biological Processleaf senescence
GO:0010200Biological Processresponse to chitin
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0043565Molecular Functionsequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 355 aa     Download sequence    Send to blast
MADDWDLQAV VRGCSSSTST TTNNTFYSTP CFTPPEFYPS SSSSSSSSSS CFSSPFFALP  60
DPMRETSNGM EELHELYKPF FPRSHQFSPL SSTSSSSSQT TSPISSSTCS FSSFLRSSNE  120
QRLLQLKPQQ QQQQTQPSKQ SQSTTTAPRS KKRKNQLKKV CQVPAESLSS DIWAWRKYGQ  180
KPIKGSPYPR GYYRCSSSKG CLARKQVERN RSDPGMFIVT YTAEHNHPAP THRNSLAGST  240
RQKPLTPQTV NADDSNNNNN IPTTKPSSPA TSVEEELVAP QSTTTESKEG RESFLLDDEE  300
EDEFGFSDMA VSDDFFVGLE GLAGPVTGEC YSDHFPGSFS LPWVANNAAT AAGSI
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
5w3x_B8e-23156231480Disease resistance protein RRS1
5w3x_D8e-23156231480Disease resistance protein RRS1
Search in ModeBase
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00422DAPTransfer from AT4G01250Download
Motif logo
Cis-element ? help Back to Top
SourceLink
PlantRegMapXP_015899566.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieveRetrieve
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_015899566.10.0WRKY transcription factor 22
TrEMBLA0A386IMV60.0A0A386IMV6_ZIZJJ; WRKY transcription factor 68
STRINGXP_010092573.11e-134(Morus notabilis)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF42053259
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G01250.12e-71WRKY family protein