PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Home  TFext  BLAST  Prediction  Download  Help  About  Links  PlantRegMap
(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID XP_015899564.1
Organism
Ziziphus jujuba
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Rhamnaceae; Paliureae; Ziziphus
Family WRKY
Protein Properties Length: 322aa    MW: 36328.3 Da    PI: 9.2437
Description WRKY family protein
Gene Model
Gene Model ID Type Source Coding Sequence
XP_015899564.1genomeNCBIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1WRKY81.11.2e-25122180259
                     --SS-EEEEEEE--TT-SS-EEEEEE-ST.T---EEEEEE-SSSTTEEEEEEES--SS- CS
            WRKY   2 dDgynWrKYGqKevkgsefprsYYrCtsa.gCpvkkkversaedpkvveitYegeHnhe 59 
                     +D ++WrKYGqK++kgs++pr+ YrC+s+ gC ++k+ve + +dp +v++tY+ e nh+
  XP_015899564.1 122 SDTWTWRKYGQKPIKGSPYPRGHYRCSSSkGCLARKQVEWNGSDPGMVIVTYTAENNHP 180
                     79*************************998****************************7 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:2.20.25.801.3E-26112182IPR003657WRKY domain
PROSITE profilePS5081131.559116182IPR003657WRKY domain
SuperFamilySSF1182903.4E-23118182IPR003657WRKY domain
SMARTSM007741.2E-28121181IPR003657WRKY domain
PfamPF031065.5E-21123180IPR003657WRKY domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0043565Molecular Functionsequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 322 aa     Download sequence    Send to blast
MISKKSLPLL WLEKILNYEA FLKRDINNIE NPVITANAAI RSGYGGKNNN YNRQGRTNNS  60
GNQLKPGPES NYHSNTRHPQ LQASQRLLST MWPTTTSQTP RSKKRKNQLK KVWQVPAESL  120
SSDTWTWRKY GQKPIKGSPY PRGHYRCSSS KGCLARKQVE WNGSDPGMVI VTYTAENNHP  180
APTDRNSLAG STRQKPLTPQ TVNGDDSNNN NNMPTTKPSS PATSIEEELV VPQSITTESK  240
EGRENFLLDD EEEDEFGFSD MTVSDDLSVG LEGLASPVTG SCYSDHFPGS FSLPRVAREK  300
FSDWWNLGLT MFRERERERE RV
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
5w3x_B3e-19106183280Disease resistance protein RRS1
5w3x_D3e-19106183280Disease resistance protein RRS1
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtTranscription factor involved in the expression of defense genes in innate immune response of plants. Interacts specifically with the W box (5'-(T)TGAC[CT]-3'), a frequently occurring elicitor-responsive cis-acting element. Activates WRKY 29, SIRK and its own promoters. {ECO:0000269|PubMed:11875555}.
Cis-element ? help Back to Top
SourceLink
PlantRegMapXP_015899564.1
Regulation -- Description ? help Back to Top
Source Description
UniProtINDUCTION: Induced after flagellin treatment. {ECO:0000269|PubMed:11875555}.
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_024922711.11e-154WRKY transcription factor 22-like, partial
SwissprotO046092e-58WRK22_ARATH; WRKY transcription factor 22
TrEMBLA0A386INF81e-144A0A386INF8_ZIZJJ; WRKY transcription factor 59
STRINGXP_010092573.15e-95(Morus notabilis)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF42053259
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G01250.14e-60WRKY family protein
Publications ? help Back to Top
  1. Ding Y, et al.
    Four distinct types of dehydration stress memory genes in Arabidopsis thaliana.
    BMC Plant Biol., 2013. 13: p. 229
    [PMID:24377444]
  2. Coego A, et al.
    The TRANSPLANTA collection of Arabidopsis lines: a resource for functional analysis of transcription factors based on their conditional overexpression.
    Plant J., 2014. 77(6): p. 944-53
    [PMID:24456507]
  3. Gkizi D, et al.
    The Innate Immune Signaling System as a Regulator of Disease Resistance and Induced Systemic Resistance Activity Against Verticillium dahliae.
    Mol. Plant Microbe Interact., 2016. 29(4): p. 313-23
    [PMID:26780421]
  4. Kloth KJ, et al.
    AtWRKY22 promotes susceptibility to aphids and modulates salicylic acid and jasmonic acid signalling.
    J. Exp. Bot., 2016. 67(11): p. 3383-96
    [PMID:27107291]
  5. Camborde L, et al.
    Detection of nucleic acid-protein interactions in plant leaves using fluorescence lifetime imaging microscopy.
    Nat Protoc, 2017. 12(9): p. 1933-1950
    [PMID:28837131]
  6. Wang S, et al.
    Bacillus cereus AR156 Activates Defense Responses to Pseudomonas syringae pv. tomato in Arabidopsis thaliana Similarly to flg22.
    Mol. Plant Microbe Interact., 2018. 31(3): p. 311-322
    [PMID:29090631]