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PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | XP_015899365.1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Rhamnaceae; Paliureae; Ziziphus
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Family | WRKY | ||||||||
Protein Properties | Length: 536aa MW: 58692.8 Da PI: 6.941 | ||||||||
Description | WRKY family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | WRKY | 97.5 | 8.8e-31 | 291 | 349 | 2 | 59 |
--SS-EEEEEEE--TT-SS-EEEEEE-ST.T---EEEEEE-SSSTTEEEEEEES--SS- CS WRKY 2 dDgynWrKYGqKevkgsefprsYYrCtsa.gCpvkkkversaedpkvveitYegeHnhe 59 +Dg++WrKYGqK+ kg+++pr+YYrCt+a gCpv+k+v+r+aed +++++tYeg+Hnh+ XP_015899365.1 291 SDGCQWRKYGQKMAKGNPCPRAYYRCTMAtGCPVRKQVQRCAEDRTILITTYEGQHNHP 349 7***************************99****************************7 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
Gene3D | G3DSA:2.20.25.80 | 9.9E-34 | 275 | 351 | IPR003657 | WRKY domain |
SuperFamily | SSF118290 | 5.75E-28 | 283 | 351 | IPR003657 | WRKY domain |
PROSITE profile | PS50811 | 29.677 | 285 | 351 | IPR003657 | WRKY domain |
SMART | SM00774 | 2.5E-37 | 290 | 350 | IPR003657 | WRKY domain |
Pfam | PF03106 | 6.8E-27 | 292 | 349 | IPR003657 | WRKY domain |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0003700 | Molecular Function | transcription factor activity, sequence-specific DNA binding | ||||
GO:0043565 | Molecular Function | sequence-specific DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 536 aa Download sequence Send to blast |
MDHLNCSPER SGEDGKRVVN ELDFFGVKTG NLMMIKEKES FHVKEEMNHR DDERLQGMQL 60 DVNTGLNLLT TNSSSDKSTL DDETSHTMED KHPTNKLAAL RTEIDRMSVE NERLKGLLNQ 120 VNNNYHVLHM HLKTVMQREK YNQKTGTAVE YKMINGLLED QKQSGVVVPR QFMDMGRIPL 180 PEKDDVNSQS SFEGRSGINC TNSGSPKNDI VESMECKTKT TSLSCKDSGR NDNNHGDRDE 240 ESQEHEFSGW VSNKVPKFIS PKDEDQTPET MSMIRKARVS VRARCEASMM SDGCQWRKYG 300 QKMAKGNPCP RAYYRCTMAT GCPVRKQVQR CAEDRTILIT TYEGQHNHPL PPAAVAMAST 360 TSAAASMLLS GSMPSADGLV TPNNLLARST TASCAPSLAT LSASAPFPTV TLDLTRPPPT 420 SSSESQRLLH PQGEFTLNLQ PLPHNVMSVP QAFSKFSGLH GLNNGAHLAA SQMQQTPMAA 480 TADTVSAATA AITSDPNFTA ALVAAITSII GNAKSNNTNN NNINNAITRS GDNNIN |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
2ayd_A | 2e-22 | 277 | 353 | 1 | 76 | WRKY transcription factor 1 |
Search in ModeBase |
Functional Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | Transcription factor. Interacts specifically with the W box (5'-(T)TGAC[CT]-3'), a frequently occurring elicitor-responsive cis-acting element (By similarity). Modulates phosphate homeostasis and Pi translocation by regulating PHO1 expression (PubMed:25733771). {ECO:0000250, ECO:0000269|PubMed:25733771}. |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | XP_015899365.1 |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_015899365.1 | 0.0 | probable WRKY transcription factor 31 | ||||
Swissprot | Q9XEC3 | 1e-121 | WRK42_ARATH; WRKY transcription factor 42 | ||||
TrEMBL | A0A251PP60 | 1e-177 | A0A251PP60_PRUPE; Uncharacterized protein | ||||
TrEMBL | A0A498KCD9 | 1e-177 | A0A498KCD9_MALDO; Uncharacterized protein | ||||
STRING | XP_008226855.1 | 1e-175 | (Prunus mume) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Fabids | OGEF866 | 34 | 121 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT1G62300.1 | 4e-90 | WRKY family protein |