PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
|
Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
---|---|---|---|---|---|---|---|---|---|
TF ID | XP_015894278.1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Rhamnaceae; Paliureae; Ziziphus
|
||||||||
Family | WRKY | ||||||||
Protein Properties | Length: 192aa MW: 21894.4 Da PI: 9.8694 | ||||||||
Description | WRKY family protein | ||||||||
Gene Model |
|
Signature Domain? help Back to Top | |||||||
---|---|---|---|---|---|---|---|
No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | WRKY | 104.1 | 7.7e-33 | 113 | 171 | 1 | 59 |
---SS-EEEEEEE--TT-SS-EEEEEE-STT---EEEEEE-SSSTTEEEEEEES--SS- CS WRKY 1 ldDgynWrKYGqKevkgsefprsYYrCtsagCpvkkkversaedpkvveitYegeHnhe 59 ldDgy+WrKYGqK vk+++fprsYYrCt++gC+vkk+v+r ++d+ vv++tYeg H h+ XP_015894278.1 113 LDDGYRWRKYGQKAVKNNKFPRSYYRCTHQGCNVKKQVQRLTKDEGVVVTTYEGMHSHP 171 59********************************************************7 PP |
Protein Features ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Database | Entry ID | E-value | Start | End | InterPro ID | Description |
Gene3D | G3DSA:2.20.25.80 | 5.1E-34 | 98 | 171 | IPR003657 | WRKY domain |
SuperFamily | SSF118290 | 1.05E-29 | 105 | 172 | IPR003657 | WRKY domain |
PROSITE profile | PS50811 | 30.125 | 108 | 173 | IPR003657 | WRKY domain |
SMART | SM00774 | 1.1E-38 | 113 | 172 | IPR003657 | WRKY domain |
Pfam | PF03106 | 1.5E-26 | 114 | 171 | IPR003657 | WRKY domain |
Gene Ontology ? help Back to Top | ||||||
---|---|---|---|---|---|---|
GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0003700 | Molecular Function | transcription factor activity, sequence-specific DNA binding | ||||
GO:0043565 | Molecular Function | sequence-specific DNA binding |
Sequence ? help Back to Top |
---|
Protein Sequence Length: 192 aa Download sequence Send to blast |
MENYQPFFPF QSSSSPSSSL SLNMVNINPH ADNTHEHQYH QVSGNNKSNG FLGLMSEMEV 60 SGTTTTTTTT ANTKTVSHSS ENDLKLAGGK KKGEKKVRKP RYAFQTRSQV DILDDGYRWR 120 KYGQKAVKNN KFPRSYYRCT HQGCNVKKQV QRLTKDEGVV VTTYEGMHSH PIEKSTDNFE 180 HILSQMQIYT TF |
3D Structure ? help Back to Top | ||||||
---|---|---|---|---|---|---|
PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
1wj2_A | 6e-28 | 103 | 172 | 7 | 76 | Probable WRKY transcription factor 4 |
2lex_A | 6e-28 | 103 | 172 | 7 | 76 | Probable WRKY transcription factor 4 |
Search in ModeBase |
Cis-element ? help Back to Top | |
---|---|
Source | Link |
PlantRegMap | XP_015894278.1 |
Regulation -- PlantRegMap ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Protein ? help Back to Top | |||||||
---|---|---|---|---|---|---|---|
Source | Hit ID | E-value | Description | ||||
Refseq | XP_015894278.1 | 1e-144 | probable WRKY transcription factor 75 | ||||
TrEMBL | A0A2P6R0A5 | 8e-91 | A0A2P6R0A5_ROSCH; Putative transcription factor WRKY family | ||||
STRING | XP_004310100.1 | 1e-89 | (Fragaria vesca) |
Orthologous Group ? help Back to Top | |||
---|---|---|---|
Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Fabids | OGEF1156 | 34 | 110 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Hit ID | E-value | Description | ||||
AT5G13080.1 | 8e-60 | WRKY DNA-binding protein 75 |