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PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | XP_015892701.1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Rhamnaceae; Paliureae; Ziziphus
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Family | MYB_related | ||||||||
Protein Properties | Length: 1140aa MW: 127842 Da PI: 9.1495 | ||||||||
Description | MYB_related family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | Myb_DNA-binding | 31 | 5.8e-10 | 46 | 81 | 3 | 40 |
SS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHH CS Myb_DNA-binding 3 rWTteEdellvdavkqlGggtWktIartmgkgRtlkqc 40 W+++E e++++a +++G++ Wk++a + +R+ +++ XP_015892701.1 46 QWSEQELERFYEAYRKHGKD-WKKVATVVR-NRSVEMI 81 6*****************99.*********.**98875 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
SuperFamily | SSF46689 | 2.54E-10 | 42 | 90 | IPR009057 | Homeodomain-like |
PROSITE profile | PS51293 | 10.005 | 42 | 95 | IPR017884 | SANT domain |
SMART | SM00717 | 4.7E-5 | 43 | 91 | IPR001005 | SANT/Myb domain |
Pfam | PF00249 | 8.8E-9 | 46 | 81 | IPR001005 | SANT/Myb domain |
Gene3D | G3DSA:1.10.10.60 | 9.0E-5 | 46 | 82 | IPR009057 | Homeodomain-like |
CDD | cd00167 | 2.55E-6 | 47 | 81 | No hit | No description |
Pfam | PF06584 | 1.1E-32 | 615 | 715 | IPR033471 | DIRP domain |
SMART | SM01135 | 7.8E-56 | 615 | 716 | IPR033471 | DIRP domain |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0005730 | Cellular Component | nucleolus | ||||
GO:0016592 | Cellular Component | mediator complex | ||||
GO:0003677 | Molecular Function | DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 1140 aa Download sequence Send to blast |
MAPSRKSRSV NKRFSYVNEV SSYKTGENAN KSRQKKRKLS DMLGPQWSEQ ELERFYEAYR 60 KHGKDWKKVA TVVRNRSVEM IEALYTMNRA YLSLPEGTAS VVGLIAMMTD HYCVLGGSDS 120 EQESNDGTGA SHKPQKRARG QFQSNTSKGL DEHFPDVSQS QSVASSNGCL SLLKKRRSGI 180 MPHAVRKRTP RVPVSYSDKD NRERKTPPSK QNLKHNIDPT GDDVAHEIAM ALTEASQKGG 240 SPQGSWISNR KVEGAMPTLY RNGERMSAKP EKTITKLCYG GVDKGGCELS LGSTEADKRD 300 YDRNESYLMD KEGAEAVEFQ QKGKRYHVNK PDVKDSVNDL LDGIKEAGSG TEEQKLSTAK 360 GRSIGKGLRK RSKKALFVRD EDSPFDALKT LADMSLMMPE TPTDPEPAVR DKGENFDVAI 420 RSTLKGSHLV LGVEDTAFTS SKLEKAKEGT HHFNAGIQKR KRKSFPFKMY KNEGQTDSHL 480 SDNQKLEAMD WIKKSTSKGK RSSHSSPNLK QGKLVKPLET TSSSTYGKSE ETDSILSSIQ 540 VPSANQPPTK MRNRWKKQMQ KPPSKIDTKT SENVLDDQSK LPASSLHNKE LNLEERLSNC 600 LSWYQAQRWS IFEWFYSAID YPWFAKREFV EYLNHVGLGH VPRLTRVEWG VIRSSLGKPR 660 RFSEHFLKEE KDKLNQYRES VRRHYSELRA GTREGLPTDL ARPLSVGQRV IAIHPRTRKI 720 QDGSILTVDH SRCYVQFDRP DLGVEYVMDI DCMPLNPLEN LPASFTRQNS AVDRLLENLK 780 EIRINEQLKE GKSDDCVKIA STENQDNICK LSKHSEGYSS SSELEAKVVH GEATKTQKVA 840 NSQPSILAQI QAKEDDVQAL SELTRALDKK EVVVSELKCL HDELMENQKD GDNSLKDSEP 900 FKKQYAAILL RLNEVNEQVS SALLCLRQRN TYQGSSQNML LKAMGSLNDP GSHSSSCVCS 960 TCRIHEPGSN VAEIVESSRI RAQKMVDIAM QALSSLKMME NGPRRIEEAI DFINKRLSEE 1020 DFGMLTCRPC TDSFVASPDQ LTAGTSKPSS TRDPPDPAST TSSNKNETKF LSELIAHCIA 1080 TLLMIQKCTE RQFPPADVAR VLDSAVTSLQ PFCSQNVPVY AEIQKCMGIL RNQILALVPT |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | XP_015892701.1 |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_015892701.1 | 0.0 | protein ALWAYS EARLY 3 isoform X2 | ||||
Swissprot | Q6A332 | 0.0 | ALY3_ARATH; Protein ALWAYS EARLY 3 | ||||
TrEMBL | A0A251QWZ3 | 0.0 | A0A251QWZ3_PRUPE; Uncharacterized protein | ||||
TrEMBL | A0A251QXC4 | 0.0 | A0A251QXC4_PRUPE; Uncharacterized protein | ||||
STRING | XP_008223159.1 | 0.0 | (Prunus mume) |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT3G21430.2 | 0.0 | DNA binding |
Publications ? help Back to Top | |||
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