![]() |
PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
|
Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
---|---|---|---|---|---|---|---|---|---|
TF ID | XP_015888417.1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Rhamnaceae; Paliureae; Ziziphus
|
||||||||
Family | LFY | ||||||||
Protein Properties | Length: 402aa MW: 45211.7 Da PI: 6.7529 | ||||||||
Description | LFY family protein | ||||||||
Gene Model |
|
Signature Domain? help Back to Top | |||||||
---|---|---|---|---|---|---|---|
No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | FLO_LFY | 642.9 | 4.8e-196 | 1 | 385 | 1 | 385 |
FLO_LFY 1 mdpeafsaslfkwdpraaaaa.pparlleeaavseap.....leaaaaaaarklreleelfkayGvryltvakiaelGftvstLvdmkdeelddl 89 md++ f+aslfkwdpr ++ p+++++e ++++++ ++aa+a + r+l +leelf+ayG+ry+t+akiaelGftvstL+dmkd+eld++ XP_015888417.1 1 MDSDPFTASLFKWDPRGGMVVqPSRSIMEPLQAATQHtgslpASAATAYSVRQLGGLEELFQAYGIRYYTAAKIAELGFTVSTLLDMKDDELDEM 95 9*************999885515555555554444443432233333334444559*************************************** PP FLO_LFY 90 mkslseifrldllvGeryGikaavraerrrleeeeaekkrrkllsedeet.aldalsqeglseepvqeekeaagsggeglgeaelvaaeekksee 183 m+sls+ifr++llvGeryGikaavra rrrl++++ ++rr+l+ +d+ t aldalsqeglseepvqeeke +gs g+g +e+vaa e+k XP_015888417.1 96 MNSLSQIFRWELLVGERYGIKAAVRAHRRRLDDDD--SRRRHLIVSDTPTnALDALSQEGLSEEPVQEEKEVVGSVGGG--MWEVVAAGERK--- 183 *********************************77..66677776665544********************99998888..99999998533... PP FLO_LFY 184 ekkkaskkkqkrkkkkelkseededeeeeededeegsgedge.erqrehPfivtepgevargkknGLDYLfdLyeqCrefLlqvqkiakerGekc 277 kk++++ k +rk+ e+++++ +de++e+d++++g+g++g erqrehPfivtepgevargkknGLDYLf+LyeqCr+fL+qvq+iakerGekc XP_015888417.1 184 -KKQRRSLKVHRKTVVENHENDADDEDDEDDDNGNGNGHGGIsERQREHPFIVTEPGEVARGKKNGLDYLFHLYEQCRDFLIQVQNIAKERGEKC 277 .233333366666666666666566666666666677776645**************************************************** PP FLO_LFY 278 PtkvtnqvfryakkagasyinkPkmrhYvhCYalhcLdeeasnalrrafkergenvGawrqacykplvaiaarqgwdidavfnahprLsiWYvPt 372 PtkvtnqvfryakkagasyinkPkmrhYvhCYalhcLdeeasnalrra kergenvGawrqacykplvaiaarqgwdid++fnahprLsiWYvPt XP_015888417.1 278 PTKVTNQVFRYAKKAGASYINKPKMRHYVHCYALHCLDEEASNALRRALKERGENVGAWRQACYKPLVAIAARQGWDIDSIFNAHPRLSIWYVPT 372 *********************************************************************************************** PP FLO_LFY 373 kLrqLChlerska 385 kLrqLCh+er++a XP_015888417.1 373 KLRQLCHAERNNA 385 **********987 PP |
Protein Features ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Database | Entry ID | E-value | Start | End | InterPro ID | Description |
Pfam | PF01698 | 1.4E-202 | 1 | 385 | IPR002910 | Floricaula/leafy protein |
Gene Ontology ? help Back to Top | ||||||
---|---|---|---|---|---|---|
GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0010077 | Biological Process | maintenance of inflorescence meristem identity | ||||
GO:0010582 | Biological Process | floral meristem determinacy | ||||
GO:0003700 | Molecular Function | transcription factor activity, sequence-specific DNA binding | ||||
GO:0031490 | Molecular Function | chromatin DNA binding | ||||
GO:0042803 | Molecular Function | protein homodimerization activity | ||||
GO:0043565 | Molecular Function | sequence-specific DNA binding | ||||
GO:0043621 | Molecular Function | protein self-association |
Sequence ? help Back to Top |
---|
Protein Sequence Length: 402 aa Download sequence Send to blast |
MDSDPFTASL FKWDPRGGMV VQPSRSIMEP LQAATQHTGS LPASAATAYS VRQLGGLEEL 60 FQAYGIRYYT AAKIAELGFT VSTLLDMKDD ELDEMMNSLS QIFRWELLVG ERYGIKAAVR 120 AHRRRLDDDD SRRRHLIVSD TPTNALDALS QEGLSEEPVQ EEKEVVGSVG GGMWEVVAAG 180 ERKKKQRRSL KVHRKTVVEN HENDADDEDD EDDDNGNGNG HGGISERQRE HPFIVTEPGE 240 VARGKKNGLD YLFHLYEQCR DFLIQVQNIA KERGEKCPTK VTNQVFRYAK KAGASYINKP 300 KMRHYVHCYA LHCLDEEASN ALRRALKERG ENVGAWRQAC YKPLVAIAAR QGWDIDSIFN 360 AHPRLSIWYV PTKLRQLCHA ERNNATLAAS SSVSTGADHL PF |
3D Structure ? help Back to Top | ||||||
---|---|---|---|---|---|---|
PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
2vy1_A | 1e-110 | 225 | 384 | 3 | 162 | PROTEIN LEAFY |
2vy2_A | 1e-110 | 225 | 384 | 3 | 162 | PROTEIN LEAFY |
Search in ModeBase |
Functional Description ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Source | Description | |||||
UniProt | Probable transcription factor. {ECO:0000250}. |
Binding Motif ? help Back to Top | |||
---|---|---|---|
Motif ID | Method | Source | Motif file |
MP00095 | SELEX | Transfer from AT5G61850 | Download |
![]() |
Cis-element ? help Back to Top | |
---|---|
Source | Link |
PlantRegMap | XP_015888417.1 |
Regulation -- PlantRegMap ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | Retrieve |
Annotation -- Nucleotide ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Source | Hit ID | E-value | Description | |||
GenBank | JN165097 | 0.0 | JN165097.2 Ziziphus jujuba cultivar Jinsi No. 4 LFY mRNA, complete cds. |
Annotation -- Protein ? help Back to Top | |||||||
---|---|---|---|---|---|---|---|
Source | Hit ID | E-value | Description | ||||
Refseq | NP_001310806.1 | 0.0 | floricaula/leafy homolog | ||||
Swissprot | O04064 | 0.0 | FLLH_POPTR; Floricaula/leafy homolog | ||||
TrEMBL | G1FCB1 | 0.0 | G1FCB1_ZIZJJ; LFY | ||||
STRING | EOY22662 | 0.0 | (Theobroma cacao) |
Orthologous Group ? help Back to Top | |||
---|---|---|---|
Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Fabids | OGEF8033 | 33 | 46 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Hit ID | E-value | Description | ||||
AT5G61850.1 | 1e-147 | floral meristem identity control protein LEAFY (LFY) |
Link Out ? help Back to Top | |
---|---|
Entrez Gene | 107423388 |
Publications ? help Back to Top | |||
---|---|---|---|
|