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PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | XP_015885330.1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Rhamnaceae; Paliureae; Ziziphus
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Family | WRKY | ||||||||
Protein Properties | Length: 633aa MW: 67898 Da PI: 6.5663 | ||||||||
Description | WRKY family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | WRKY | 96.7 | 1.6e-30 | 362 | 420 | 2 | 59 |
--SS-EEEEEEE--TT-SS-EEEEEE-ST.T---EEEEEE-SSSTTEEEEEEES--SS- CS WRKY 2 dDgynWrKYGqKevkgsefprsYYrCtsa.gCpvkkkversaedpkvveitYegeHnhe 59 Dg++WrKYGqK+ kg+++pr+YYrCt+a gCpv+k+v+r+a+d +++++tYeg+Hnh+ XP_015885330.1 362 TDGCQWRKYGQKMAKGNPCPRAYYRCTMAvGCPVRKQVQRCADDRTILITTYEGNHNHP 420 7*********************************************************7 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
Gene3D | G3DSA:2.20.25.80 | 3.0E-33 | 346 | 422 | IPR003657 | WRKY domain |
SuperFamily | SSF118290 | 1.22E-27 | 354 | 422 | IPR003657 | WRKY domain |
PROSITE profile | PS50811 | 29.516 | 356 | 422 | IPR003657 | WRKY domain |
SMART | SM00774 | 1.0E-36 | 361 | 421 | IPR003657 | WRKY domain |
Pfam | PF03106 | 1.9E-26 | 363 | 420 | IPR003657 | WRKY domain |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0010200 | Biological Process | response to chitin | ||||
GO:0016036 | Biological Process | cellular response to phosphate starvation | ||||
GO:0045892 | Biological Process | negative regulation of transcription, DNA-templated | ||||
GO:0080169 | Biological Process | cellular response to boron-containing substance deprivation | ||||
GO:0003700 | Molecular Function | transcription factor activity, sequence-specific DNA binding | ||||
GO:0043565 | Molecular Function | sequence-specific DNA binding | ||||
GO:0044212 | Molecular Function | transcription regulatory region DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 633 aa Download sequence Send to blast |
MDKGWGLTLN SDCIGFFLNK PPPSAAAASA VKLDHNKRNH PFAAASRMFS GAEFPVKLGR 60 TDMDHTSSDD NNNNRLVVDE VDFFSDKNRP AATAADDDGS KTIGFVSVKK ENSHGDVAAR 120 PGLDVNTGLH LLTANTGSDQ STVDDGISSD VEDKRAKNIE LAQLQGELRH MNAENQKLKD 180 MLTQVTNNYS ALQMHLVSIM QHQQINHQKN QELDDQTVEG KSDDKKNHHH EIGGGGAIVP 240 RQFLDLRPSS ATAETDDQVS NSSSEDRTRS ATPQNVEVAS KDYVGKSEIA PFDQENSTFP 300 DGKRLGREES PESETQGWVP NKVPKLNNGG SKPIDQQQSS SEATMRKARV SVRARSEAPM 360 ITDGCQWRKY GQKMAKGNPC PRAYYRCTMA VGCPVRKQVQ RCADDRTILI TTYEGNHNHP 420 LPPAALAMAN TTAAAASMLL TGSTSSADGL MNPNLLARAI LPCSSNMATI SASAPFPTVT 480 LDLTNNSPNP LQFQRPPQPQ FQIPFAAAGQ VPQNFASSST PSLPQVFGQA LYNQSKFSGL 540 QLSQEMGSSQ LGQQAAQMLQ TQPASFADTV SAATAAITAD PNFTAALAAA ISSIISGGHP 600 NNNNNNTNTS SNSNITTSNN NNNNSKIGSF TGN |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
2ayd_A | 3e-22 | 348 | 424 | 1 | 76 | WRKY transcription factor 1 |
Search in ModeBase |
Functional Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | Transcription factor involved in the control of processes related to senescence and pathogen defense (PubMed:12000796). Interacts specifically with the W box (5'-(T)TGAC[CT]-3'), a frequently occurring elicitor-responsive cis-acting element (PubMed:12000796). Activates the transcription of the SIRK gene and represses its own expression and that of the WRKY42 genes (PubMed:12000796). Modulates phosphate homeostasis and Pi translocation by regulating PHO1 expression (PubMed:25733771). {ECO:0000269|PubMed:12000796, ECO:0000269|PubMed:25733771}. |
Binding Motif ? help Back to Top | |||
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Motif ID | Method | Source | Motif file |
MP00209 | DAP | Transfer from AT1G62300 | Download |
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Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | XP_015885330.1 |
Regulation -- Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | INDUCTION: By salicylic acid, ethylene, jasmonic acid, pathogens, wounding and strongly during leaf senescence. {ECO:0000269|PubMed:11449049, ECO:0000269|PubMed:11722756}. |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | Retrieve |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_015885330.1 | 0.0 | probable WRKY transcription factor 31 | ||||
Swissprot | Q9C519 | 1e-165 | WRKY6_ARATH; WRKY transcription factor 6 | ||||
TrEMBL | A0A251PHL5 | 0.0 | A0A251PHL5_PRUPE; Uncharacterized protein | ||||
STRING | XP_008364089.1 | 0.0 | (Malus domestica) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Fabids | OGEF866 | 34 | 121 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT1G62300.1 | 1e-146 | WRKY family protein |