PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID XP_015884766.1
Organism
Ziziphus jujuba
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Rhamnaceae; Paliureae; Ziziphus
Family B3
Protein Properties Length: 559aa    MW: 64156 Da    PI: 9.4801
Description B3 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
XP_015884766.1genomeNCBIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1B360.43.2e-19999198
                    EEEE-..-HHHHTT-EE--HHH.HTT---..--SEEEEEETTS-EEEEEE..EEETTEEEE-TTHHHHHHHHT--TT-EEEEEE-SSSEE..EEEEE CS
              B3  1 ffkvltpsdvlksgrlvlpkkfaeehggkkeesktltledesgrsWevkliyrkksgryvltkGWkeFvkangLkegDfvvFkldgrsefelvvkvf 97
                    ffkvl  sdv ++  +++p +++++ ++  ++  + t++ +sgr W+v++  +++ + +++++GW++F+k ++L++gDf+vF +dg+s+f+ ++  +
  XP_015884766.1  9 FFKVL-MSDVARQ--MRIPPEYVKNLDK--RSLGKCTIRGPSGRCWTVEV--DQRENNFYFAGGWQDFAKYHRLEVGDFLVFDYDGKSNFRAKIYCR 98
                    78888.5666665..8*******66654..455599**************..**********************************9***9988877 PP

                    - CS
              B3 98 r 98
                    +
  XP_015884766.1 99 S 99
                    6 PP
2B338.12.7e-124615411398
                     TT-EE--HHH.HTT---..--SEEEEEETTS-EEEEEE..EEETTEEEE-TTHHHHHHHHT--TT-EEEEEE-SSSEE..EEEEE- CS
              B3  13 sgrlvlpkkfaeehggkkeesktltledesgrsWevkliyrkksgryvltkGWkeFvkangLkegDfvvFkldgrsefelvvkvfr 98 
                     + r+++p k a+e g+ +++    +l+d  grsW vkl    ++ + ++t+G  +F+ an++k g +++F++++   + ++v + r
  XP_015884766.1 461 LYRMSIPMKIAREKGLLNKK--SAVLQDVFGRSWPVKLV-IDSDLHLIMTSGFADFCYANEVKNGNTLLFEFVK--PRVMKVYISR 541
                     5689**********888544..6***************4.44445799***********************765..5556777766 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5086313.535699IPR003340B3 DNA binding domain
SuperFamilySSF1019363.73E-217102IPR015300DNA-binding pseudobarrel domain
Gene3DG3DSA:2.40.330.103.8E-21799IPR015300DNA-binding pseudobarrel domain
CDDcd100173.83E-19897No hitNo description
PfamPF023621.4E-16999IPR003340B3 DNA binding domain
SMARTSM010193.8E-159101IPR003340B3 DNA binding domain
SuperFamilySSF1019361.14E-18445542IPR015300DNA-binding pseudobarrel domain
Gene3DG3DSA:2.40.330.107.1E-17445543IPR015300DNA-binding pseudobarrel domain
PROSITE profilePS5086311.138449543IPR003340B3 DNA binding domain
SMARTSM010191.5E-10452543IPR003340B3 DNA binding domain
CDDcd100172.56E-9460541No hitNo description
PfamPF023623.5E-10461541IPR003340B3 DNA binding domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 559 aa     Download sequence    Send to blast
MAGGTASSFF KVLMSDVARQ MRIPPEYVKN LDKRSLGKCT IRGPSGRCWT VEVDQRENNF  60
YFAGGWQDFA KYHRLEVGDF LVFDYDGKSN FRAKIYCRSS SKEDAGLSEN NNDKLVSLVE  120
KKIYLEPKVE VDELESEVYK EKCKKKITDS NIVACDHGLS RKKPCSGKKV EGYYLEPKVE  180
VDELVPEINK EQCKRKVIDE LVPENNKEQC KRKVIDSNIT ACECGLSRKK SHAGKKVEGN  240
YLEPKVEVDE LEPEIHKENI KKKVIDSNII DRDCGLSREK PNIGQKVGRN CLQRKVQADE  300
IERVVYKEKC KKKVTNSNKV DRNCDSARKK PCANEKVEGN HLQPQVEDEE LQPEIYKKYS  360
KKKVMNSKKV ALDCAFSRKK PCTGKKLEEN LLQPKVEAEE IEPEIYKENS KKKVMNDKVA  420
RDCVSSEKIP RADDEQKPPI FPFSLKSKNS CFVATWKKHR LYRMSIPMKI AREKGLLNKK  480
SAVLQDVFGR SWPVKLVIDS DLHLIMTSGF ADFCYANEVK NGNTLLFEFV KPRVMKVYIS  540
RAEVHVSGAR KGRNRIEVL
Cis-element ? help Back to Top
SourceLink
PlantRegMapXP_015884766.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_015884766.10.0uncharacterized protein LOC107420344
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G66980.12e-16B3 family protein