PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | XP_015882797.1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Rhamnaceae; Paliureae; Ziziphus
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Family | HD-ZIP | ||||||||
Protein Properties | Length: 849aa MW: 93376.5 Da PI: 6.3679 | ||||||||
Description | HD-ZIP family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | Homeobox | 58 | 1.6e-18 | 23 | 81 | 3 | 57 |
--SS--HHHHHHHHHHHHHSSS--HHHHHHHHHHC....TS-HHHHHHHHHHHHHHHHC CS Homeobox 3 kRttftkeqleeLeelFeknrypsaeereeLAkkl....gLterqVkvWFqNrRakekk 57 k ++t+eq+e+Le+++ ++++ps +r++L +++ +++ +q+kvWFqNrR +ek+ XP_015882797.1 23 KYVRYTPEQVEALERVYSECPKPSSLRRQQLIRECpilsNIEPKQIKVWFQNRRCREKQ 81 6789*****************************************************97 PP | |||||||
2 | START | 173.3 | 1.5e-54 | 171 | 378 | 2 | 204 |
HHHHHHHHHHHHHHHC-TT-EEEEEXCCTTEEEEEEESSS.SCEEEEEEEECCSCHHHHHHHHHCCCGGCT-TT-SEEEEEEEECTT..EEEEEE CS START 2 laeeaaqelvkkalaeepgWvkssesengdevlqkfeeskvdsgealrasgvvdmvlallveellddkeqWdetlakaetlevissg..galqlm 94 +aee+++e+++ka+ ++ Wv++ +++g++++ +++ s+++sg a+r++g+v +++ v+e+l+d++ W ++++ +++l vi ++ g+++l+ XP_015882797.1 171 IAEETLAEFLSKATGTAVDWVQMIGMKPGPDSIGIVAVSRNCSGVAARVCGLVSLEPT-KVAEILKDRPSWYRDCRCIDVLSVIPTAnaGTIELI 264 68999*****************************************************.8888888888******************9******* PP EEXXTTXX-SSX.EEEEEEEEEEE.TTS-EEEEEEEEE-TTS--....-TTSEE-EESSEEEEEEEECTCEEEEEEEE-EE--SSXXHHHHHHHH CS START 95 vaelqalsplvp.RdfvfvRyirqlgagdwvivdvSvdseqkppe...sssvvRaellpSgiliepksnghskvtwvehvdlkgrlphwllrslv 185 +++++a+++l++ Rdf+++Ry+ +l++g++vi+++S++s + p+ ss+vRae+lpSg+li+p+++g+s +++v+h+dl++++++++lr+l+ XP_015882797.1 265 YMQTYAPTTLAAaRDFWTLRYTTSLEDGSLVICERSLTSSTGGPTgppPSSFVRAEMLPSGFLIRPCEGGGSIIHIVDHIDLDAWSVPEVLRPLY 359 ***************************************99999888899********************************************* PP HHHHHHHHHHHHHHTXXXX CS START 186 ksglaegaktwvatlqrqc 204 +s+ + ++k++ a+l++ + XP_015882797.1 360 ESSKILAQKMTIAALRHIR 378 **************99865 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
Gene3D | G3DSA:1.10.10.60 | 2.3E-19 | 6 | 81 | IPR009057 | Homeodomain-like |
PROSITE profile | PS50071 | 15.694 | 18 | 82 | IPR001356 | Homeobox domain |
SMART | SM00389 | 4.4E-15 | 20 | 86 | IPR001356 | Homeobox domain |
SuperFamily | SSF46689 | 2.44E-16 | 23 | 85 | IPR009057 | Homeodomain-like |
Pfam | PF00046 | 4.4E-16 | 23 | 81 | IPR001356 | Homeobox domain |
CDD | cd00086 | 3.00E-16 | 23 | 83 | No hit | No description |
CDD | cd14686 | 2.39E-6 | 75 | 114 | No hit | No description |
PROSITE profile | PS50848 | 26.466 | 161 | 389 | IPR002913 | START domain |
CDD | cd08875 | 1.30E-70 | 165 | 381 | No hit | No description |
Gene3D | G3DSA:3.30.530.20 | 1.2E-22 | 169 | 375 | IPR023393 | START-like domain |
SMART | SM00234 | 6.9E-51 | 170 | 380 | IPR002913 | START domain |
Pfam | PF01852 | 3.7E-52 | 171 | 378 | IPR002913 | START domain |
SuperFamily | SSF55961 | 6.59E-38 | 171 | 382 | No hit | No description |
Pfam | PF08670 | 5.0E-49 | 704 | 848 | IPR013978 | MEKHLA |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0009855 | Biological Process | determination of bilateral symmetry | ||||
GO:0009944 | Biological Process | polarity specification of adaxial/abaxial axis | ||||
GO:0010072 | Biological Process | primary shoot apical meristem specification | ||||
GO:0080060 | Biological Process | integument development | ||||
GO:0005634 | Cellular Component | nucleus | ||||
GO:0003677 | Molecular Function | DNA binding | ||||
GO:0008289 | Molecular Function | lipid binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 849 aa Download sequence Send to blast |
MALVMHKDSS SNSNKQQQMD SSKYVRYTPE QVEALERVYS ECPKPSSLRR QQLIRECPIL 60 SNIEPKQIKV WFQNRRCREK QRKEASRLQT VNRKLSAMNK LLMEENDRLQ KQVSHLVYEN 120 GYMRQQLQAS GTTTDNSCES VVMNGQHQQQ QNPTPQQPQR DANNPAGLLA IAEETLAEFL 180 SKATGTAVDW VQMIGMKPGP DSIGIVAVSR NCSGVAARVC GLVSLEPTKV AEILKDRPSW 240 YRDCRCIDVL SVIPTANAGT IELIYMQTYA PTTLAAARDF WTLRYTTSLE DGSLVICERS 300 LTSSTGGPTG PPPSSFVRAE MLPSGFLIRP CEGGGSIIHI VDHIDLDAWS VPEVLRPLYE 360 SSKILAQKMT IAALRHIRQI AQETSGEIQC GGSRQPAVLR TFSQRLCRGF NDAVNGFADD 420 GWSLMGSDGV EDVTIVINSS PNKFLGSQHN TSIFPTFGGV LCAKASMLLQ NVPPALLVRF 480 LREHRSEWAD YGVDAYSAAC LKASPYAVPC ARPGGFPGSQ VILPLAHTVE HEEFMEVVRL 540 EGHTFSPEDV ALARDMYILQ LCSGIDENAV GACAQLVFAP IDESFADEAP LLPSGFRVIP 600 LDPKSDGPAA TRTLDLASTL EVGPGSTRPT SEANTNSDNL RSVLTIAFQF TFENHLRDNV 660 AAMARQYVRS VVGSVQRVAM AIAPSRLSSQ MGSKLLPHSP EALTLAQWIC RSYRIYTGGE 720 LVHVDSQSGD AVLKQLWNHS DAIMCCSVKT NASPLFTFAN QAGLDMLETT LVALQDIMLD 780 KILDEAGRKI LCSEFSKIMQ QGFAYLPPGI CISSMGRPVS YERAVAWKVL NDDDSHHCLA 840 FVFVNWSFV |
Functional Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | Probable transcription factor. {ECO:0000250}. | |||||
UniProt | Probable transcription factor. {ECO:0000250}. |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | XP_015882797.1 |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_015882797.1 | 0.0 | homeobox-leucine zipper protein ATHB-14-like isoform X1 | ||||
Refseq | XP_015882858.1 | 0.0 | homeobox-leucine zipper protein ATHB-14-like isoform X1 | ||||
Refseq | XP_015882921.1 | 0.0 | homeobox-leucine zipper protein ATHB-14-like isoform X1 | ||||
Swissprot | A2XK30 | 0.0 | HOX32_ORYSI; Homeobox-leucine zipper protein HOX32 | ||||
Swissprot | Q6AST1 | 0.0 | HOX32_ORYSJ; Homeobox-leucine zipper protein HOX32 | ||||
TrEMBL | A0A2N9J8X2 | 0.0 | A0A2N9J8X2_FAGSY; Uncharacterized protein | ||||
STRING | EOY25496 | 0.0 | (Theobroma cacao) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Fabids | OGEF5176 | 33 | 53 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT2G34710.1 | 0.0 | HD-ZIP family protein |
Publications ? help Back to Top | |||
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