PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID XP_015875972.1
Organism
Ziziphus jujuba
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Rhamnaceae; Paliureae; Ziziphus
Family MYB_related
Protein Properties Length: 681aa    MW: 76584.2 Da    PI: 10.2609
Description MYB_related family protein
Gene Model
Gene Model ID Type Source Coding Sequence
XP_015875972.1genomeNCBIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Myb_DNA-binding32.52e-101063247
                     SSS-HHHHHHHHHHHHHTTTT-HHHHHHHHT........TTS-HHHHHHHHHHH CS
  Myb_DNA-binding  2 grWTteEdellvdavkqlGggtWktIartmg........kgRtlkqcksrwqky 47
                     ++W t E++ll++av ++G+++W++Ia +++          +t+  c+++++++
   XP_015875972.1 10 QPWGTLEELLLACAVSRHGTRCWDSIAMELQnrsssvapSLLTPQTCRDKFHDL 63
                     79*****************************88888877667888888887766 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF466891.2E-5868IPR009057Homeodomain-like
SMARTSM007175.1E-6866IPR001005SANT/Myb domain
Gene3DG3DSA:1.10.10.609.7E-61064IPR009057Homeodomain-like
PfamPF002491.4E-91063IPR001005SANT/Myb domain
CDDcd001671.28E-51164No hitNo description
SuperFamilySSF473709.55E-18309417IPR001487Bromodomain
SMARTSM002975.0E-18311420IPR001487Bromodomain
Gene3DG3DSA:1.20.920.108.5E-15320417IPR001487Bromodomain
CDDcd043695.94E-17322415No hitNo description
PROSITE profilePS5001411.933330401IPR001487Bromodomain
PfamPF004394.1E-11331405IPR001487Bromodomain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
GO:0005515Molecular Functionprotein binding
Sequence ? help Back to Top
Protein Sequence    Length: 681 aa     Download sequence    Send to blast
MAKEHETSAQ PWGTLEELLL ACAVSRHGTR CWDSIAMELQ NRSSSVAPSL LTPQTCRDKF  60
HDLKRRFTSK NDDRPTSLVD ELRRIRVEEL RREVRRRDVS ILSLELKVKR MEEERDRSLK  120
EAELQVDLKK IPDGSDGGVR ELAPRPENHA EKSNSGNDSD TDDRENRSFN ESNSTSQKVE  180
EAKQNGNGVV IEKAECEPEQ NESDPVRIRC KPERDWSANG KVIDDENGNE TETVGRGPEA  240
GESNEAWESV GESKREGKEL VGVASKQSSD VQSSASLSRK KRRRKGQGDG VAAGGASSGE  300
EPEGDEVSPA TKRVSTVKSE PLVKFLGIIR SHRLGSVFER RLRSQESGRY KNLIRRHMDL  360
QTVQARLDKG VYSDCIHKFF RDLLLLFNNA IVFFRKTSPE HIAARELRAL VLKEMNHNKL  420
GKKPQPTTLK MEPKREVDSS AKSNKSSSII VECRKRSSNK ALSEGTNKRR DVKKERKVDE  480
KPKANEKKID ASSAKMKDRG VRKKRTHETV GRRGSSRGTS TKGGETKHEY GGNELSSHDA  540
LEAKVEKKEN AKKKQGVESF LKRMKQNSPK DQVEEENDDD EDDDDDIVSE EESKDSKMEK  600
EKKGRGRKKS EGRREERVTR SSSSGGRGSG VRDEIGRAKR GVGRPPKRQD SMAAASGRRG  660
RENNGDSEVG NGGRSRKRLR R
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1278284RKKRRRK
2279284KKRRRK
3502506KKRTH
Cis-element ? help Back to Top
SourceLink
PlantRegMapXP_015875972.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_015875972.10.0glutamic acid-rich protein-like
TrEMBLA0A2I4FSM60.0A0A2I4FSM6_JUGRE; uncharacterized protein LOC109001698
STRINGcassava4.1_002976m0.0(Manihot esculenta)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF18702972
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G44430.15e-30DNA-binding bromodomain-containing protein