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PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | XP_015875086.1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Rhamnaceae; Paliureae; Ziziphus
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Family | MYB_related | ||||||||
Protein Properties | Length: 1202aa MW: 134891 Da PI: 9.3153 | ||||||||
Description | MYB_related family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | Myb_DNA-binding | 32.9 | 1.5e-10 | 45 | 81 | 3 | 41 |
SS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHH CS Myb_DNA-binding 3 rWTteEdellvdavkqlGggtWktIartmgkgRtlkqck 41 W++eE e+++++ +++G++ Wk++a+t+ +R+ +++ XP_015875086.1 45 QWSKEELERFYEGYRKYGKD-WKKVAATVR-NRSTEMVE 81 6*****************99.*********.***98875 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
PROSITE profile | PS51293 | 10.348 | 41 | 94 | IPR017884 | SANT domain |
SuperFamily | SSF46689 | 1.27E-10 | 41 | 89 | IPR009057 | Homeodomain-like |
SMART | SM00717 | 2.6E-4 | 42 | 90 | IPR001005 | SANT/Myb domain |
Gene3D | G3DSA:1.10.10.60 | 5.1E-6 | 45 | 84 | IPR009057 | Homeodomain-like |
Pfam | PF00249 | 2.4E-8 | 45 | 85 | IPR001005 | SANT/Myb domain |
CDD | cd00167 | 2.27E-5 | 46 | 80 | No hit | No description |
SMART | SM01135 | 9.6E-59 | 686 | 787 | IPR033471 | DIRP domain |
Pfam | PF06584 | 2.4E-33 | 686 | 786 | IPR033471 | DIRP domain |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0003677 | Molecular Function | DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 1202 aa Download sequence Send to blast |
MAPTRKSRSV NRRFSNLNEV SQEKDAGNSS KNKQRRKLSD KLGSQWSKEE LERFYEGYRK 60 YGKDWKKVAA TVRNRSTEMV EALYNMNRAY LSLPEGTASV VGLIAMMTDH YNVLEETESE 120 RESNDASGVS RKSQKRKRGK DHLITSKDPF QSHSVASADG CLSLLKKKHF DGNQPRAVGK 180 RTPRFPVSYS HRKDYMENYI SPIKRGRKLE NENDDEVAHV AALALAEASQ RGGSPQVSQT 240 PYRRTEPIKS SPVQSWERMR PQRETARVKL HGSSMDEDWL EGSIGSRGAE NGDYAKDSSS 300 LLDMEGVGTV EVHRKGKKFY RKKEKVEDME NDQFDDGGEA CSGTDEGLNI NAVKGQVEVE 360 VSNSNAERFS PRGQKKRSKE LFFGDESSAL DALQTLADMS LMMPISTMES ESSVQLKEER 420 TTLDIEDKCS VPEATSTSQV RNRSKLAGSK QKVPHAISGV ENTTSKKSKL GRDSTSDINT 480 ISEAEQQPQS TTKAWKRKRK SGVPEPILPQ SKLGTDSTTN INTIFEAEQQ PQSTAKAWKR 540 KRKSLVSSSE AHLDSHTSEP SKTEVFCEEE NKPVVKGKRT GQNTTPSKQW KSVKSPEGSL 600 SSDYRRTGSD QVVSTSQVPS ASQVNLPTKR RSRRKMDLPR ALSPKEMIFA DLLKEQLNKC 660 SNSVKEKLSR CLLSYMVRRW CTFEWFYSAI DYPWFAKREF EEYLNHVGLG HIPRLTRVEW 720 GVIRSSLGKP RRFSEHFLRE EREKLKQYRD SVRKHYSELR MGIREGLPTD LARPLSVGQR 780 VIALHPKTRE VHDGSVLTVD HDKCRVQFDR PEIGVELIMD VDCMPLNPLE NMPEALRRQN 840 ISAENFSLAS KELQMNGNLN FGGSMMFASG GHLEKAPSPM NAFVKHGKGD STHDISQLKA 900 AADFGIAQQA ARSQGQPCIL ANNQAREADI RALSELTRAL DKKEALLMEL NNTNNDILES 960 QNNGDSFLKD SEPFKKHYAT VSSALLHLRQ RNTYPGNPLL PWLKHPAYST IHGGLPSPFD 1020 GFSLSQDSAS GVEIVRVSRL EAHRYVDVAI QAFLTRKEGE DPFLRIREAL DSIDSKPLAP 1080 DSRVLVSRSQ EQANGNMAHQ NQLSSCTAET TLTSDSPRSN FHTDSDKNEA VIPSELITSI 1140 LATVFMMKTC SERQCPPGDV AQMLESAVTS LHPCCPQNLP LYREIQMCMG ILKTKMLALV 1200 PT |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | XP_015875086.1 |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_015875085.1 | 0.0 | protein ALWAYS EARLY 2-like isoform X3 | ||||
TrEMBL | A0A2P5AMS0 | 0.0 | A0A2P5AMS0_TREOI; Protein LIN-9/Protein ALWAYS EARLY | ||||
STRING | EMJ09328 | 0.0 | (Prunus persica) |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT3G21430.2 | 0.0 | DNA binding |