PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

XP_015875084.1

Organism

Ziziphus jujuba

Taxonomic ID

326968

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Rhamnaceae; Paliureae; Ziziphus

Family

MYB_related

Protein Properties

Length: 1213aa MW: 136044 Da PI: 9.3135

Description

MYB_related family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
XP_015875084.1	genome	NCBI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	Myb_DNA-binding	32.9	1.5e-10	45	81	3	41
SS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHH CS Myb_DNA-binding 3 rWTteEdellvdavkqlGggtWktIartmgkgRtlkqck 41 W++eE e+++++ +++G++ Wk++a+t+ +R+ +++ XP_015875084.1 45 QWSKEELERFYEGYRKYGKD-WKKVAATVR-NRSTEMVE 81 6***************99.*****.*98875 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
SuperFamily	SSF46689	1.35E-10	41	89	IPR009057	Homeodomain-like
PROSITE profile	PS51293	10.348	41	94	IPR017884	SANT domain
SMART	SM00717	2.6E-4	42	90	IPR001005	SANT/Myb domain
Pfam	PF00249	2.4E-8	45	85	IPR001005	SANT/Myb domain
Gene3D	G3DSA:1.10.10.60	5.1E-6	45	84	IPR009057	Homeodomain-like
CDD	cd00167	2.23E-5	46	80	No hit	No description
SMART	SM01135	9.6E-59	686	787	IPR033471	DIRP domain
Pfam	PF06584	2.5E-33	686	786	IPR033471	DIRP domain

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0003677	Molecular Function	DNA binding

Sequence ? help Back to Top
Protein Sequence Length: 1213 aa Download sequence Send to blast
MAPTRKSRSV NRRFSNLNEV SQEKDAGNSS KNKQRRKLSD KLGSQWSKEE LERFYEGYRK 60 YGKDWKKVAA TVRNRSTEMV EALYNMNRAY LSLPEGTASV VGLIAMMTDH YNVLEETESE 120 RESNDASGVS RKSQKRKRGK DHLITSKDPF QSHSVASADG CLSLLKKKHF DGNQPRAVGK 180 RTPRFPVSYS HRKDYMENYI SPIKRGRKLE NENDDEVAHV AALALAEASQ RGGSPQVSQT 240 PYRRTEPIKS SPVQSWERMR PQRETARVKL HGSSMDEDWL EGSIGSRGAE NGDYAKDSSS 300 LLDMEGVGTV EVHRKGKKFY RKKEKVEDME NDQFDDGGEA CSGTDEGLNI NAVKGQVEVE 360 VSNSNAERFS PRGQKKRSKE LFFGDESSAL DALQTLADMS LMMPISTMES ESSVQLKEER 420 TTLDIEDKCS VPEATSTSQV RNRSKLAGSK QKVPHAISGV ENTTSKKSKL GRDSTSDINT 480 ISEAEQQPQS TTKAWKRKRK SGVPEPILPQ SKLGTDSTTN INTIFEAEQQ PQSTAKAWKR 540 KRKSLVSSSE AHLDSHTSEP SKTEVFCEEE NKPVVKGKRT GQNTTPSKQW KSVKSPEGSL 600 SSDYRRTGSD QVVSTSQVPS ASQVNLPTKR RSRRKMDLPR ALSPKEMIFA DLLKEQLNKC 660 SNSVKEKLSR CLLSYMVRRW CTFEWFYSAI DYPWFAKREF EEYLNHVGLG HIPRLTRVEW 720 GVIRSSLGKP RRFSEHFLRE EREKLKQYRD SVRKHYSELR MGIREGLPTD LARPLSVGQR 780 VIALHPKTRE VHDGSVLTVD HDKCRVQFDR PEIGVELIMD VDCMPLNPLE NMPEALRRQN 840 ISAENFSLAS KELQMNGNLN FGGSMMFASG GHLEKAPSPM NAFVKHGKGD STHDISQLKA 900 AADFGIAQQA ARSQGQPCIL ANNQAREADI RALSELTRAL DKKEALLMEL NNTNNDILES 960 QNNGDSFLKD SEPFKKHYAT VLVQLKEASG QVSSALLHLR QRNTYPGNPL LPWLKHPAYS 1020 TIHGGLPSPF DGFSLSQDSA SGVEIVRVSR LEAHRYVDVA IQAFLTRKEG EDPFLRIREA 1080 LDSIDSKPLA PDSRVLVSRS QEQANGNMAH QNQLSSCTAE TTLTSDSPRS NFHTDSDKNE 1140 AVIPSELITS ILATVFMMKT CSERQCPPGD VAQMLESAVT SLHPCCPQNL PLYREIQMCM 1200 GILKTKMLAL VPT

Sequence ? help Back to Top

Protein Sequence Length: 1213 aa Download sequence Send to blast

MAPTRKSRSV NRRFSNLNEV SQEKDAGNSS KNKQRRKLSD KLGSQWSKEE LERFYEGYRK  60
YGKDWKKVAA TVRNRSTEMV EALYNMNRAY LSLPEGTASV VGLIAMMTDH YNVLEETESE  120
RESNDASGVS RKSQKRKRGK DHLITSKDPF QSHSVASADG CLSLLKKKHF DGNQPRAVGK  180
RTPRFPVSYS HRKDYMENYI SPIKRGRKLE NENDDEVAHV AALALAEASQ RGGSPQVSQT  240
PYRRTEPIKS SPVQSWERMR PQRETARVKL HGSSMDEDWL EGSIGSRGAE NGDYAKDSSS  300
LLDMEGVGTV EVHRKGKKFY RKKEKVEDME NDQFDDGGEA CSGTDEGLNI NAVKGQVEVE  360
VSNSNAERFS PRGQKKRSKE LFFGDESSAL DALQTLADMS LMMPISTMES ESSVQLKEER  420
TTLDIEDKCS VPEATSTSQV RNRSKLAGSK QKVPHAISGV ENTTSKKSKL GRDSTSDINT  480
ISEAEQQPQS TTKAWKRKRK SGVPEPILPQ SKLGTDSTTN INTIFEAEQQ PQSTAKAWKR  540
KRKSLVSSSE AHLDSHTSEP SKTEVFCEEE NKPVVKGKRT GQNTTPSKQW KSVKSPEGSL  600
SSDYRRTGSD QVVSTSQVPS ASQVNLPTKR RSRRKMDLPR ALSPKEMIFA DLLKEQLNKC  660
SNSVKEKLSR CLLSYMVRRW CTFEWFYSAI DYPWFAKREF EEYLNHVGLG HIPRLTRVEW  720
GVIRSSLGKP RRFSEHFLRE EREKLKQYRD SVRKHYSELR MGIREGLPTD LARPLSVGQR  780
VIALHPKTRE VHDGSVLTVD HDKCRVQFDR PEIGVELIMD VDCMPLNPLE NMPEALRRQN  840
ISAENFSLAS KELQMNGNLN FGGSMMFASG GHLEKAPSPM NAFVKHGKGD STHDISQLKA  900
AADFGIAQQA ARSQGQPCIL ANNQAREADI RALSELTRAL DKKEALLMEL NNTNNDILES  960
QNNGDSFLKD SEPFKKHYAT VLVQLKEASG QVSSALLHLR QRNTYPGNPL LPWLKHPAYS  1020
TIHGGLPSPF DGFSLSQDSA SGVEIVRVSR LEAHRYVDVA IQAFLTRKEG EDPFLRIREA  1080
LDSIDSKPLA PDSRVLVSRS QEQANGNMAH QNQLSSCTAE TTLTSDSPRS NFHTDSDKNE  1140
AVIPSELITS ILATVFMMKT CSERQCPPGD VAQMLESAVT SLHPCCPQNL PLYREIQMCM  1200
GILKTKMLAL VPT

Cis-element ? help Back to Top
Source	Link
PlantRegMap	XP_015875084.1

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_015875084.1	0.0	protein ALWAYS EARLY 2-like isoform X2
TrEMBL	A0A2P5AMS0	0.0	A0A2P5AMS0_TREOI; Protein LIN-9/Protein ALWAYS EARLY
STRING	XP_008246389.1	0.0	(Prunus mume)

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT3G21430.2	0.0	DNA binding