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PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | XP_015867881.1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Rhamnaceae; Paliureae; Ziziphus
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Family | LFY | ||||||||
Protein Properties | Length: 175aa MW: 19995.8 Da PI: 9.5812 | ||||||||
Description | LFY family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | FLO_LFY | 391.2 | 1.3e-119 | 1 | 158 | 228 | 385 |
FLO_LFY 228 qrehPfivtepgevargkknGLDYLfdLyeqCrefLlqvqkiakerGekcPtkvtnqvfryakkagasyinkPkmrhYvhCYalhcLdeeasnal 322 qrehPfivtepgevargkknGLDYLf+LyeqCr+fL+qvq+iakerGekcPtkvtnqvfryakkagasyinkPkmrhYvhCYalhcLdeeasnal XP_015867881.1 1 QREHPFIVTEPGEVARGKKNGLDYLFHLYEQCRDFLIQVQNIAKERGEKCPTKVTNQVFRYAKKAGASYINKPKMRHYVHCYALHCLDEEASNAL 95 8********************************************************************************************** PP FLO_LFY 323 rrafkergenvGawrqacykplvaiaarqgwdidavfnahprLsiWYvPtkLrqLChlerska 385 rra kergenvGawrqacykplvaiaarqgwdid++fnahprLsiWYvPtkLrqLCh+er++a XP_015867881.1 96 RRALKERGENVGAWRQACYKPLVAIAARQGWDIDSIFNAHPRLSIWYVPTKLRQLCHAERNNA 158 ************************************************************987 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
Pfam | PF01698 | 4.1E-116 | 1 | 158 | IPR002910 | Floricaula/leafy protein |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0003677 | Molecular Function | DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 175 aa Download sequence Send to blast |
QREHPFIVTE PGEVARGKKN GLDYLFHLYE QCRDFLIQVQ NIAKERGEKC PTKVTNQVFR 60 YAKKAGASYI NKPKMRHYVH CYALHCLDEE ASNALRRALK ERGENVGAWR QACYKPLVAI 120 AARQGWDIDS IFNAHPRLSI WYVPTKLRQL CHAERNNATL AASSSVSTGA DHLPF |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
2vy1_A | 1e-110 | 1 | 157 | 6 | 162 | PROTEIN LEAFY |
2vy2_A | 1e-110 | 1 | 157 | 6 | 162 | PROTEIN LEAFY |
Search in ModeBase |
Functional Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | May regulate indeterminacy during leaf and flower development. |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | XP_015867881.1 |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | JN165097 | 0.0 | JN165097.2 Ziziphus jujuba cultivar Jinsi No. 4 LFY mRNA, complete cds. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | NP_001310806.1 | 1e-130 | floricaula/leafy homolog | ||||
Swissprot | O48559 | 1e-116 | UNI_PEA; Protein UNIFOLIATA | ||||
TrEMBL | G1FCB1 | 1e-128 | G1FCB1_ZIZJJ; LFY | ||||
STRING | XP_008392692.1 | 1e-120 | (Malus domestica) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Fabids | OGEF8033 | 33 | 46 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT5G61850.1 | 1e-111 | floral meristem identity control protein LEAFY (LFY) |
Link Out ? help Back to Top | |
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Entrez Gene | 107423388 |