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PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | XP_015865876.1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Rhamnaceae; Paliureae; Ziziphus
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Family | TCP | ||||||||
Protein Properties | Length: 324aa MW: 35238 Da PI: 9.5495 | ||||||||
Description | TCP family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | TCP | 130.6 | 1.5e-40 | 70 | 157 | 2 | 88 |
TCP 2 agkkdrhskihTkvggRdRRvRlsaecaarfFdLqdeLGfdkdsktieWLlqqakpaikeltgtssssasec.eaesssssasnsssg 88 a+k+++++++hTkv+gR+RR+R++a+caar+F+L++eLG+++d++ti+WLlqqa+p+i+++tgt++++as++ a+ss+s+++ +s + XP_015865876.1 70 APKRSSNKDRHTKVEGRGRRIRMPALCAARIFQLTRELGHKSDGETIQWLLQQAEPSIIAATGTGTIPASAMaAAGSSVSQQQGNSLS 157 789******************************************************************9997777777777755544 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
Pfam | PF03634 | 5.3E-32 | 75 | 310 | IPR005333 | Transcription factor, TCP |
PROSITE profile | PS51369 | 28.016 | 76 | 130 | IPR017887 | Transcription factor TCP subgroup |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0008361 | Biological Process | regulation of cell size | ||||
GO:1900056 | Biological Process | negative regulation of leaf senescence | ||||
GO:0005634 | Cellular Component | nucleus | ||||
GO:0000987 | Molecular Function | core promoter proximal region sequence-specific DNA binding | ||||
GO:0003700 | Molecular Function | transcription factor activity, sequence-specific DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 324 aa Download sequence Send to blast |
MDPKGSKQPQ EVPNFLSLPQ HQHQHQHQQN QQQQQQQQQQ QPNMGENKPA EIKDFQIVIA 60 DKEEGKKQLA PKRSSNKDRH TKVEGRGRRI RMPALCAARI FQLTRELGHK SDGETIQWLL 120 QQAEPSIIAA TGTGTIPASA MAAAGSSVSQ QQGNSLSAGL HQKIDELGGS SIGSGSSRTS 180 WAMVGGNLGR PHVATGLWPP TVSGFGFQSS SGPSTTNLGS ENSNYLQKIG FPGFDLPVTN 240 MGPMSFTSIL GGNNQQLPGL ELGLSQDGHI GVLNPALTQI YQQMGQQARV HQQHQQQQQQ 300 QHQHQQQHQH QQPPAKDDSQ GSGQ |
Functional Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | Transcription factor that binds to the site II motif (3'-TGGGCC/T-5') in the promoter of PCNA-2 and to 3'-GCCCG/A-5' elements in the promoters of cyclin CYCB1-1 and ribosomal protein genes. {ECO:0000269|PubMed:12631321, ECO:0000269|PubMed:16123132}. |
Binding Motif ? help Back to Top | |||
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Motif ID | Method | Source | Motif file |
MP00636 | PBM | Transfer from Glyma.19G095300 | Download |
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Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | XP_015865876.1 |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | Retrieve |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_015865876.1 | 0.0 | transcription factor TCP20-like | ||||
Refseq | XP_015893968.1 | 0.0 | transcription factor TCP20-like | ||||
Swissprot | Q9LSD5 | 3e-90 | TCP20_ARATH; Transcription factor TCP20 | ||||
TrEMBL | A0A2I4DY73 | 1e-165 | A0A2I4DY73_JUGRE; transcription factor TCP20-like | ||||
STRING | VIT_14s0068g01690.t01 | 1e-163 | (Vitis vinifera) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Fabids | OGEF3339 | 32 | 69 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT3G27010.1 | 3e-77 | TCP family protein |