PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

XP_013905108.1

Organism

Monoraphidium neglectum

Taxonomic ID

145388

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Chlorophyta; Chlorophyceae; Sphaeropleales; Selenastraceae; Monoraphidium

Family

ERF

Protein Properties

Length: 1264aa MW: 131183 Da PI: 4.9151

Description

ERF family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
XP_013905108.1	genome	BU	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	AP2	34.3	6e-11	308	358	2	55
AP2 2 gykGVrwdkkrgrWvAeIrdpseng.krkrfslgkfgtaeeAakaaiaarkkleg 55 y+GV+w+k++++W+++I+ ps +g + ++f+ +t+e Aa ++a +++++g XP_013905108.1 308 AYRGVSWHKTSKKWFVQICNPSADGkRERTFH----DTEEAAALCYDAKARQYHG 358 69****************999994559999....88888889999999998 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
Gene3D	G3DSA:3.40.50.150	2.3E-5	19	99	IPR029063	S-adenosyl-L-methionine-dependent methyltransferase
SuperFamily	SSF53335	5.98E-6	199	240	IPR029063	S-adenosyl-L-methionine-dependent methyltransferase
Gene3D	G3DSA:3.40.50.150	8.5E-7	201	240	IPR029063	S-adenosyl-L-methionine-dependent methyltransferase
Pfam	PF05050	5.1E-6	203	243	IPR006342	Methyltransferase FkbM
SuperFamily	SSF54171	4.64E-10	307	367	IPR016177	DNA-binding domain
Gene3D	G3DSA:3.30.730.10	1.3E-9	308	366	IPR001471	AP2/ERF domain
Pfam	PF00847	2.5E-5	308	357	IPR001471	AP2/ERF domain
SMART	SM00380	4.7E-4	308	372	IPR001471	AP2/ERF domain
PROSITE profile	PS51032	11.851	308	366	IPR001471	AP2/ERF domain

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0006355	Biological Process	regulation of transcription, DNA-templated
GO:0005634	Cellular Component	nucleus
GO:0003677	Molecular Function	DNA binding
GO:0003700	Molecular Function	transcription factor activity, sequence-specific DNA binding

Sequence ? help Back to Top
Protein Sequence Length: 1264 aa Download sequence Send to blast
MYKLVFINGR PRDKPAHCQA CGPTGRVVAL EPTPAAAAAC RDNVVRHAVW CAARGVGVAP 60 VEVVEAAAGD GSCGEAEFTI YERASGWSSM APDDDETAAN MEAYIEQRLE AIGAAGSGGG 120 GGGSGEGGGA GSLVAAAGTA TAFAAAAAPE SRAAEEEAPV GLVERLLLPV AAALRRQPLG 180 RGALRLLERA YIRLVLMGGR QHVRCRVVAL GQLFQELRIE RVSLLKVDVE GAELDVLRGL 240 GHDGWAREEA ARQYAWMVHK LKGAEASAQC QVPPTPSEVA RLDAISLEQL LAEFRASAEV 300 FSRGRSSAYR GVSWHKTSKK WFVQICNPSA DGKRERTFHD TEEAAALCYD AKARQYHGSK 360 AKLNFPLPGD PGYVASSPAA PAPAVPASGG PAVLPAQGSG AAAEVTAGTE ATSGGGGGVG 420 VAAAAGLNGS GLTWGKLVSF NPQKVLDPAE YERLSKIATT VEVPPEVTTL PERNLEGLLA 480 DLDQDNPDSA PLIKRYSSAL EWCRARRAAW EEHTKSGHWY VYPALGPDPE PLQAAGGGQD 540 RGAGAAADAG AAGAQAPKFP PPPQGPAPTD VPASCGDGSD GGLAGASGDG ATAALAALDG 600 GEAGSGQADS ALERDTAQEQ PALAGQTGVD QDLAAGAVAA AGADSAGDAV VGAVGVPEGA 660 AAGEGDAAVG VLGAAAEGGG RPPVDPGLMS SSSDELASCW SSGDDDEGSG AQYSAPDFAA 720 EWAAAFPFTS AGRQWSSLVV YAPDREDARR QVVSLFEQYE RRCLRLHPDR PAFHRYPQAG 780 QPVYPPREEG GVTRGRKWDV YRDCWHIADK HPHSEVFWLD ESCTHQWIPG RRVMVTRVDP 840 RRREEMARHA GQRAALNRDA AGPLPRLSDD SDNSSDEEGN ESGSGHGTDE ERGARLSPAQ 900 LSGADALMAA AAAAAAAAQP HGPGTVPDAG RNPADAAAAA AAAERVARYS ALRQKRLLRE 960 AAARRERRAA RAAVGRPAES SDEGGDEEEE EEVERDARGG ADGGVGGGEG GHANKRVRRE 1020 ELRIDPRPWD EVMADEGPEV SCGDDAGGGS GGAGRDAVSG GTDQGPRRRQ AGGAEKGQEG 1080 RRGHGGQQQA AGQQEEGLQQ EEAARRQQHK EDLREGRIMA QSIEEWTPLP ESYFDYPPPG 1140 APRPSRHAPL AALAESALSG LRGRPQLSAR ARAAAAAGLP APARPAVDSK RLWRGIDVPK 1200 LANIPAGSLW GTQISEDMRA VDSSSSDYSS SGDEEQRAAR DEAREGAKGL GADEEGAATI 1260 KRRP

Sequence ? help Back to Top

Protein Sequence Length: 1264 aa Download sequence Send to blast

MYKLVFINGR PRDKPAHCQA CGPTGRVVAL EPTPAAAAAC RDNVVRHAVW CAARGVGVAP  60
VEVVEAAAGD GSCGEAEFTI YERASGWSSM APDDDETAAN MEAYIEQRLE AIGAAGSGGG  120
GGGSGEGGGA GSLVAAAGTA TAFAAAAAPE SRAAEEEAPV GLVERLLLPV AAALRRQPLG  180
RGALRLLERA YIRLVLMGGR QHVRCRVVAL GQLFQELRIE RVSLLKVDVE GAELDVLRGL  240
GHDGWAREEA ARQYAWMVHK LKGAEASAQC QVPPTPSEVA RLDAISLEQL LAEFRASAEV  300
FSRGRSSAYR GVSWHKTSKK WFVQICNPSA DGKRERTFHD TEEAAALCYD AKARQYHGSK  360
AKLNFPLPGD PGYVASSPAA PAPAVPASGG PAVLPAQGSG AAAEVTAGTE ATSGGGGGVG  420
VAAAAGLNGS GLTWGKLVSF NPQKVLDPAE YERLSKIATT VEVPPEVTTL PERNLEGLLA  480
DLDQDNPDSA PLIKRYSSAL EWCRARRAAW EEHTKSGHWY VYPALGPDPE PLQAAGGGQD  540
RGAGAAADAG AAGAQAPKFP PPPQGPAPTD VPASCGDGSD GGLAGASGDG ATAALAALDG  600
GEAGSGQADS ALERDTAQEQ PALAGQTGVD QDLAAGAVAA AGADSAGDAV VGAVGVPEGA  660
AAGEGDAAVG VLGAAAEGGG RPPVDPGLMS SSSDELASCW SSGDDDEGSG AQYSAPDFAA  720
EWAAAFPFTS AGRQWSSLVV YAPDREDARR QVVSLFEQYE RRCLRLHPDR PAFHRYPQAG  780
QPVYPPREEG GVTRGRKWDV YRDCWHIADK HPHSEVFWLD ESCTHQWIPG RRVMVTRVDP  840
RRREEMARHA GQRAALNRDA AGPLPRLSDD SDNSSDEEGN ESGSGHGTDE ERGARLSPAQ  900
LSGADALMAA AAAAAAAAQP HGPGTVPDAG RNPADAAAAA AAAERVARYS ALRQKRLLRE  960
AAARRERRAA RAAVGRPAES SDEGGDEEEE EEVERDARGG ADGGVGGGEG GHANKRVRRE  1020
ELRIDPRPWD EVMADEGPEV SCGDDAGGGS GGAGRDAVSG GTDQGPRRRQ AGGAEKGQEG  1080
RRGHGGQQQA AGQQEEGLQQ EEAARRQQHK EDLREGRIMA QSIEEWTPLP ESYFDYPPPG  1140
APRPSRHAPL AALAESALSG LRGRPQLSAR ARAAAAAGLP APARPAVDSK RLWRGIDVPK  1200
LANIPAGSLW GTQISEDMRA VDSSSSDYSS SGDEEQRAAR DEAREGAKGL GADEEGAATI  1260
KRRP

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_013905108.1	0.0	hypothetical protein MNEG_1869
TrEMBL	A0A0D2LHZ0	0.0	A0A0D2LHZ0_9CHLO; Uncharacterized protein

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Chlorophytae	OGCP10509	4	4

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT1G51190.1	1e-07	AP2 family protein

Link Out ? help Back to Top
Entrez Gene	25734747

Publications ? help Back to Top
Bogen C, et al. Reconstruction of the lipid metabolism for the microalga Monoraphidium neglectum from its genome sequence reveals characteristics suitable for biofuel production. BMC Genomics, 2013. 14: p. 926 [PMID:24373495]