PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | XP_013896501.1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Chlorophyta; Chlorophyceae; Sphaeropleales; Selenastraceae; Monoraphidium
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Family | ERF | ||||||||
Protein Properties | Length: 200aa MW: 20433 Da PI: 12.0509 | ||||||||
Description | ERF family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | AP2 | 69.9 | 4.6e-22 | 113 | 162 | 2 | 55 |
AP2 2 gykGVrwdkkrgrWvAeIrdpsengkrkrfslgkfgtaeeAakaaiaarkkleg 55 +y+GVr+++ +g+W+AeIrdp++ +r +lg+f+taeeAa+a++ a+++++g XP_013896501.1 113 QYRGVRQRP-WGKWAAEIRDPTK---GQRLWLGTFDTAEEAARAYDSAAREIRG 162 6********.**********965...4*************************98 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
SMART | SM00380 | 5.1E-32 | 113 | 175 | IPR001471 | AP2/ERF domain |
Gene3D | G3DSA:3.30.730.10 | 2.9E-30 | 113 | 165 | IPR001471 | AP2/ERF domain |
SuperFamily | SSF54171 | 2.48E-21 | 113 | 166 | IPR016177 | DNA-binding domain |
PROSITE profile | PS51032 | 23.367 | 113 | 171 | IPR001471 | AP2/ERF domain |
CDD | cd00018 | 8.74E-27 | 113 | 166 | No hit | No description |
Pfam | PF00847 | 4.0E-15 | 114 | 162 | IPR001471 | AP2/ERF domain |
PRINTS | PR00367 | 2.8E-12 | 114 | 125 | IPR001471 | AP2/ERF domain |
PRINTS | PR00367 | 2.8E-12 | 136 | 152 | IPR001471 | AP2/ERF domain |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0008219 | Biological Process | cell death | ||||
GO:0009723 | Biological Process | response to ethylene | ||||
GO:0009735 | Biological Process | response to cytokinin | ||||
GO:0009753 | Biological Process | response to jasmonic acid | ||||
GO:0010286 | Biological Process | heat acclimation | ||||
GO:0042991 | Biological Process | transcription factor import into nucleus | ||||
GO:0045893 | Biological Process | positive regulation of transcription, DNA-templated | ||||
GO:0048364 | Biological Process | root development | ||||
GO:0048825 | Biological Process | cotyledon development | ||||
GO:0051707 | Biological Process | response to other organism | ||||
GO:0005634 | Cellular Component | nucleus | ||||
GO:0005737 | Cellular Component | cytoplasm | ||||
GO:0005886 | Cellular Component | plasma membrane | ||||
GO:0003677 | Molecular Function | DNA binding | ||||
GO:0003700 | Molecular Function | transcription factor activity, sequence-specific DNA binding | ||||
GO:0042802 | Molecular Function | identical protein binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 200 aa Download sequence Send to blast |
MAPAVATPVD APLTASTGAQ GIEVRPARAT KGVPAPFVQQ QQLQRAAAAA AAAAAVAAAP 60 AALQQQLQQQ YFLPSHTLDP EGPRAAARQA AAAAFGSSSP VAGAGAARKF NNQYRGVRQR 120 PWGKWAAEIR DPTKGQRLWL GTFDTAEEAA RAYDSAAREI RGPNAVRLQI RARARVAGGL 180 GGGQAGAGPA RRVGSAVAAV |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
5wx9_A | 1e-19 | 111 | 166 | 12 | 68 | Ethylene-responsive transcription factor ERF096 |
Search in ModeBase |
Binding Motif ? help Back to Top | |||
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Motif ID | Method | Source | Motif file |
MP00027 | PBM | Transfer from AT4G23750 | Download |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_013896501.1 | 1e-133 | hypothetical protein MNEG_10479 | ||||
TrEMBL | A0A0D2M8U2 | 1e-131 | A0A0D2M8U2_9CHLO; Uncharacterized protein |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Chlorophytae | OGCP132 | 15 | 40 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT3G14230.3 | 1e-16 | related to AP2 2 |
Link Out ? help Back to Top | |
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Entrez Gene | 25727645 |
Publications ? help Back to Top | |||
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