PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | XP_013637264.1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Brassiceae; Brassica
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Family | HD-ZIP | ||||||||
Protein Properties | Length: 842aa MW: 92236.7 Da PI: 6.2376 | ||||||||
Description | HD-ZIP family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | Homeobox | 57.4 | 2.4e-18 | 19 | 77 | 3 | 57 |
--SS--HHHHHHHHHHHHHSSS--HHHHHHHHHHC....TS-HHHHHHHHHHHHHHHHC CS Homeobox 3 kRttftkeqleeLeelFeknrypsaeereeLAkkl....gLterqVkvWFqNrRakekk 57 k ++t+eq+e+Le+++ ++++ps +r++L +++ +++ +q+kvWFqNrR +ek+ XP_013637264.1 19 KYVRYTPEQVEALERVYTECPKPSSLRRQQLIRECpilsNIEPKQIKVWFQNRRCREKQ 77 5678*****************************************************97 PP | |||||||
2 | START | 174.1 | 9e-55 | 169 | 376 | 2 | 205 |
HHHHHHHHHHHHHHHC-TT-EEEEEXCCTTEEEEEEESSS.SCEEEEEEEECCSCHHHHHHHHHCCCGGCT-TT-SEEEEEEEECTT..EEEEEE CS START 2 laeeaaqelvkkalaeepgWvkssesengdevlqkfeeskvdsgealrasgvvdmvlallveellddkeqWdetlakaetlevissg..galqlm 94 +aeea++e+++ka+ ++ Wv++ +++g++++ +++ s+++sg a+ra+g+v +++ v+e+++d++ W +++++++tl vi g g+++l+ XP_013637264.1 169 IAEEALAEFLSKATGTAVDWVQMIGMKPGPDSIGIVAISRNCSGIAARACGLVSLEPM-KVAEIVKDRPSWLRDCRSVDTLSVIPAGngGTIELI 262 799*******************************************************.7777777777*****************999****** PP EEXXTTXX-SSX.EEEEEEEEEEE.TTS-EEEEEEEEE-TTS--....-TTSEE-EESSEEEEEEEECTCEEEEEEEE-EE--SSXXHHHHHHHH CS START 95 vaelqalsplvp.RdfvfvRyirqlgagdwvivdvSvdseqkppe...sssvvRaellpSgiliepksnghskvtwvehvdlkgrlphwllrslv 185 +++++a+++l++ Rdf+++Ry+ +l++g++ ++++S++ + p+ ss++vRae++pSg+li+p+++g+s +++v+hvdl++ ++++++r+l+ XP_013637264.1 263 YTQMYAPTTLAAaRDFWTLRYTTCLEDGSY-VCERSLSAATGGPTgppSSNFVRAEMRPSGFLIRPCDGGGSILHIVDHVDLDALSVPEVMRPLY 356 ************************777776.69******999998899*********************************************** PP HHHHHHHHHHHHHHTXXXXX CS START 186 ksglaegaktwvatlqrqce 205 +s+ + ++k++va+l++ ++ XP_013637264.1 357 ESSKILAQKMTVAALRHVRQ 376 ***************98765 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
PROSITE profile | PS50071 | 15.321 | 14 | 78 | IPR001356 | Homeobox domain |
SMART | SM00389 | 5.7E-15 | 16 | 82 | IPR001356 | Homeobox domain |
SuperFamily | SSF46689 | 8.55E-17 | 18 | 82 | IPR009057 | Homeodomain-like |
CDD | cd00086 | 4.03E-16 | 19 | 79 | No hit | No description |
Pfam | PF00046 | 6.3E-16 | 20 | 77 | IPR001356 | Homeobox domain |
Gene3D | G3DSA:1.10.10.60 | 2.0E-18 | 21 | 77 | IPR009057 | Homeodomain-like |
CDD | cd14686 | 5.40E-6 | 71 | 110 | No hit | No description |
PROSITE profile | PS50848 | 23.329 | 159 | 386 | IPR002913 | START domain |
CDD | cd08875 | 2.41E-71 | 163 | 378 | No hit | No description |
SuperFamily | SSF55961 | 9.34E-34 | 165 | 380 | No hit | No description |
Gene3D | G3DSA:3.30.530.20 | 3.8E-20 | 167 | 372 | IPR023393 | START-like domain |
SMART | SM00234 | 6.0E-57 | 168 | 377 | IPR002913 | START domain |
Pfam | PF01852 | 2.6E-52 | 169 | 376 | IPR002913 | START domain |
SuperFamily | SSF55961 | 6.59E-6 | 415 | 492 | No hit | No description |
SuperFamily | SSF55961 | 6.59E-6 | 524 | 599 | No hit | No description |
Pfam | PF08670 | 1.8E-46 | 696 | 841 | IPR013978 | MEKHLA |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0003677 | Molecular Function | DNA binding | ||||
GO:0008289 | Molecular Function | lipid binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 842 aa Download sequence Send to blast |
MMVHTMHRES PDKGLDSGKY VRYTPEQVEA LERVYTECPK PSSLRRQQLI RECPILSNIE 60 PKQIKVWFQN RRCREKQRKE AARLQTVNRK LNAMNKLLME ENDRLQKQVS HLVYENGHMK 120 HQIHTASGTT TDNSCESVVV ASGQQHQQQN PNPQHLQRDA NNPAGLHSIA EEALAEFLSK 180 ATGTAVDWVQ MIGMKPGPDS IGIVAISRNC SGIAARACGL VSLEPMKVAE IVKDRPSWLR 240 DCRSVDTLSV IPAGNGGTIE LIYTQMYAPT TLAAARDFWT LRYTTCLEDG SYVCERSLSA 300 ATGGPTGPPS SNFVRAEMRP SGFLIRPCDG GGSILHIVDH VDLDALSVPE VMRPLYESSK 360 ILAQKMTVAA LRHVRQIAQE TSGEVQYGGG RQPAVLRTFS QRLSRGFNDA VNGFVDDGWS 420 PMGSDGAEDI TLMINLSPGK FGGNSFLPSF GSGVLCAKAS MLLQNVPPAV LVRFLREHRS 480 EWADYGVDAY AAASLRASPF AVPCARAGGF PSNQVILPLA QTVEHEEFLE VVRLEGHAYS 540 PEDMGLARDM YLLQLCSGVD EDVVGGCAQL VFAPIDESFA DDAPLLPSGF RVIPLEPKST 600 PNGASVNRTL DLASALEGST RQGGEADPNG CNFRSVLTIA FQFTFDNHTR DNVASMARQY 660 VRNIVGSIQR VALAIAPRPG SSICPISAPT SPEALTLVRW ISRSYRVHTG VDLFGSDSQT 720 SGDTLLHQLW SHTDAILCCS MKTNASPVFT FANQTGLDML ETTLLALQDI TLDNTLDEPG 780 RKALCSEFPK IMQQGYAHLP AGVCASSMWR LVSYEQATVW KVLEDDESNH CLAFMFVNWS 840 FV |
Expression -- Description ? help Back to Top | ||||||
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Source | Description | |||||
Uniprot | DEVELOPMENTAL STAGE: Expressed at the youngest stages of ovule development, predominantly to the adaxial side of the ovule primordium. Later, expression becomes restricted to a region in the distal chalaza. When the integuments initiate, expressed in the inner integument, with highest expression in the inner layer of the inner integument. Expressed in the vegetative shoot apical meristem (SAM) and initially throughout the presumptive cotyledons. At the globular stage, just before cotyledon outgrowth, expressed at high levels in cotyledon adaxial domains. Expression is lost from the SAM of torpedo stage embryos but is regained late in embryogenesis, extending to young primordia after germination, and becoming progressively restricted to the adaxial domain and the vasculature. Preferentially expressed in the adaxial domain of the developing leaf. Expressed throughout the plastochron 0 (P0) leaf primordium and expression increases in P1 to become preferentially localized to the adaxial leaf domain by the P2 stage (polar expression). {ECO:0000269|PubMed:11395776, ECO:0000269|PubMed:15328016}. | |||||
Uniprot | TISSUE SPECIFICITY: Expressed in the center of the meristem and on the adaxial side of the leaves. {ECO:0000269|PubMed:11395776}. |
Functional Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | Probable transcription factor involved in the determination of adaxial-abaxial polarity in ovule primordium. Specifies adaxial leaf fates. {ECO:0000269|PubMed:11395776, ECO:0000269|PubMed:15328016, ECO:0000269|PubMed:15598805}. |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | XP_013637264.1 |
Regulation -- Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | INDUCTION: Repressed by miR165 and miR166. {ECO:0000269|PubMed:14999284, ECO:0000269|PubMed:16033795, ECO:0000269|PubMed:17237362}. |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | AJ441291 | 0.0 | AJ441291.1 Arabidopsis thaliana mRNA for homeodomain-leucine zipper protein 14 (ATHB-14 gene). | |||
GenBank | AY099791 | 0.0 | AY099791.1 Arabidopsis thaliana homeodomain transcription factor (At2g34710) mRNA, complete cds. | |||
GenBank | BT000335 | 0.0 | BT000335.1 Arabidopsis thaliana homeodomain transcription factor (At2g34710) mRNA, complete cds. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_013637264.1 | 0.0 | PREDICTED: homeobox-leucine zipper protein ATHB-14 isoform X2 | ||||
Swissprot | O04291 | 0.0 | ATB14_ARATH; Homeobox-leucine zipper protein ATHB-14 | ||||
TrEMBL | A0A0D3C462 | 0.0 | A0A0D3C462_BRAOL; Uncharacterized protein | ||||
STRING | Bo4g182800.1 | 0.0 | (Brassica oleracea) |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT2G34710.1 | 0.0 | HD-ZIP family protein |