 |
Plant Transcription
Factor Database
|
Transcription Factor Information
|
Basic
Information? help
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| TF ID |
XP_013634110.1 |
| Organism |
|
| Taxonomic ID |
|
| Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Brassiceae; Brassica
|
| Family |
MYB |
| Protein Properties |
Length: 262aa MW: 28398.7 Da PI: 8.8386 |
| Description |
MYB family protein |
| Gene Model |
| Gene Model ID |
Type |
Source |
Coding Sequence |
| XP_013634110.1 | genome | NCBI | View CDS |
|
| Signature Domain? help Back to Top |
 |
| No. |
Domain |
Score |
E-value |
Start |
End |
HMM Start |
HMM End |
| 1 | Myb_DNA-binding | 56.7 | 5.7e-18 | 13 | 58 | 1 | 47 |
TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHH CS
Myb_DNA-binding 1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqky 47
+g+W++eEd+ll +v+++G+++W++I++ + gR++k+c++rw +
XP_013634110.1 13 KGPWSPEEDQLLQTLVQKHGPRNWSLISKPIS-GRSGKSCRLRWCNQ 58
79******************************.***********985 PP
|
| 2 | Myb_DNA-binding | 52.7 | 9.7e-17 | 67 | 109 | 3 | 47 |
SS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHH CS
Myb_DNA-binding 3 rWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqky 47
++++eEde ++ a++++G++ W+tIar ++ gRt++ +k++w++
XP_013634110.1 67 AFSPEEDETILLAHARFGNK-WATIARLLN-GRTDNAIKNHWNST 109
79******************.*********.***********986 PP
|
| Sequence ? help Back to Top |
| Protein Sequence Length: 262 aa
Download sequence Send
to blast |
MSGSTRKETD RIKGPWSPEE DQLLQTLVQK HGPRNWSLIS KPISGRSGKS CRLRWCNQLS 60
PEVEHRAFSP EEDETILLAH ARFGNKWATI ARLLNGRTDN AIKNHWNSTL KRKCSGGGGG 120
WTSNDGGNGG YDGSLTDEQP LKRTASGGGG GVVSTGLFMN PGSPSGSDVS EQSSGPVSHV 180
YKPKARAGGV VIESAVKDPA ISLSLSLPWV NESTQGRDTA ELFPARKQEE ERGTFSGDFM 240
KVVQEMIKTE VRSYMAELQL GI
|
| 3D Structure ? help Back to Top |
 |
| PDB ID |
Evalue |
Query Start |
Query End |
Hit Start |
Hit End |
Description |
| 1gv2_A | 5e-41 | 12 | 114 | 3 | 105 | MYB PROTO-ONCOGENE PROTEIN |
| 1h88_C | 3e-40 | 12 | 114 | 57 | 159 | MYB PROTO-ONCOGENE PROTEIN |
| 1h89_C | 3e-40 | 12 | 114 | 57 | 159 | MYB PROTO-ONCOGENE PROTEIN |
| 1mse_C | 4e-41 | 12 | 114 | 3 | 105 | C-Myb DNA-Binding Domain |
| 1msf_C | 4e-41 | 12 | 114 | 3 | 105 | C-Myb DNA-Binding Domain |
| Search in ModeBase |
| Functional Description ? help
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| Source |
Description |
| UniProt | Transcription factor that functions in salt stress response. Acts as negative regulator of NHX7/SOS1 and CBL4/SOS3 induction in response to salt stress (PubMed:23809151). In response to auxin, activates the transcription of the auxin-responsive gene IAA19. The IAA19 transcription activation by MYB73 is enhanced by direct interaction between MYB73 and PYL8 (PubMed:24894996). {ECO:0000269|PubMed:23809151, ECO:0000269|PubMed:24894996}. |
| Regulation -- Description ? help
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| Source |
Description |
| UniProt | INDUCTION: Induced by salt stress. {ECO:0000269|PubMed:23809151}. |
