PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID XP_013604100.1
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Brassiceae; Brassica
Family CAMTA
Protein Properties Length: 907aa    MW: 102980 Da    PI: 7.8791
Description CAMTA family protein
Gene Model
Gene Model ID Type Source Coding Sequence
XP_013604100.1genomeNCBIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1CG-1160.63e-50301463118
            CG-1   3 ke.kkrwlkneeiaaiLenfekheltlelktrpksgsliLynrkkvryfrkDGyswkkkkdgktvrEdhekLKvggvevlycyYahseenptfqr 96 
                     +e  +rwl+++ei+a+L n++ +++  ++ + pksg++++++rk++r+frkDG++wkkkkdgkt++E+he+LKvg+ e +++yYah+++nptf r
  XP_013604100.1  30 EEaYTRWLRPNEIHALLSNHKYFTINVKPVHLPKSGTIVFFDRKMLRNFRKDGHNWKKKKDGKTIKEAHEHLKVGNEERIHVYYAHGDDNPTFVR 124
                     55589****************************************************************************************** PP

            CG-1  97 rcywlLeeelekivlvhylevk 118
                     rcywlL++++e+ivlvhy+e++
  XP_013604100.1 125 RCYWLLDKSQEHIVLVHYRETH 146
                     *******************985 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5143775.86325151IPR005559CG-1 DNA-binding domain
SMARTSM010761.1E-7228146IPR005559CG-1 DNA-binding domain
PfamPF038598.4E-4532144IPR005559CG-1 DNA-binding domain
SuperFamilySSF812961.26E-13371457IPR014756Immunoglobulin E-set
CDDcd002042.47E-13557667No hitNo description
PfamPF127968.4E-7558637IPR020683Ankyrin repeat-containing domain
Gene3DG3DSA:1.25.40.202.0E-15558670IPR020683Ankyrin repeat-containing domain
SuperFamilySSF484032.33E-15566673IPR020683Ankyrin repeat-containing domain
PROSITE profilePS5029713.761575640IPR020683Ankyrin repeat-containing domain
PROSITE profilePS5008811.808608640IPR002110Ankyrin repeat
SMARTSM002482.7E-6608637IPR002110Ankyrin repeat
PROSITE profilePS500967.053757782IPR000048IQ motif, EF-hand binding site
SMARTSM00015160772794IPR000048IQ motif, EF-hand binding site
SMARTSM000152.3E-4795817IPR000048IQ motif, EF-hand binding site
PROSITE profilePS500969.761796820IPR000048IQ motif, EF-hand binding site
PfamPF006128.4E-5797817IPR000048IQ motif, EF-hand binding site
SMARTSM0001511871893IPR000048IQ motif, EF-hand binding site
PROSITE profilePS500968.334872901IPR000048IQ motif, EF-hand binding site
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
GO:0005515Molecular Functionprotein binding
Sequence ? help Back to Top
Protein Sequence    Length: 907 aa     Download sequence    Send to blast
MAGVDSARLM GSEIHGFHTL QDLDIQTMLE EAYTRWLRPN EIHALLSNHK YFTINVKPVH  60
LPKSGTIVFF DRKMLRNFRK DGHNWKKKKD GKTIKEAHEH LKVGNEERIH VYYAHGDDNP  120
TFVRRCYWLL DKSQEHIVLV HYRETHEVQA APATPGNSYS SSTTDHLSAK PVAEDINSGV  180
SNACNTARSN SLVARNHEIS LHEINTLDWD ELLVEADMTN QSSPTEDDVL YFTEQLQTAP  240
MGSAQQGNHQ AVYNGSTDIP SYLGLGDPVY QNNSPCGARE FSSQHLHCVV DPNQQTRDSS  300
ATVADEQGDA LLNNGYGSQE SFGKWVNNFI SDSPGSVDDP SLEAVYTPGQ ESSAPPAVVH  360
SQSNIPEQVF NITDVSPAWA YSTEKTKILV TGFFHDSFQH FGRSNLFCIC GELRVPAEFL  420
QMGVYRCFLP PQSPGIVNLY LSADGTKPIS QLFSFEHRSV PVIEKAVPQE DQLYKWEEFE  480
FQVRLSHLLF TSSSKISVFS SRISPDNLLE AKKLASRTSH LLNSWAYLMK SIQANELPFD  540
QARDHLFELT LKNRLKEWLL EKVIENRNTK EYDSKGLGVI HLCAVLGYTW SILLFSWANI  600
SLDFRDKHGW TALHWAAYYG REKMVAALLS AGARPNLVTD PTKEYLGGCT AADIAQQKGY  660
EGLAAFLAEK CLVAQFRDMK MAGNISGNLE GVKAETSTNP GHSNEEEQSL KDTLAAYRTA  720
AEAAARIQGA FREHELKVRS KAVRFASKEE EAKNIIAAMK IQHAFRNYET RRKIAAAARI  780
QYMFQTWKMR REFLNMRKKA IKIQAVFRGF QVRRQYQKIT WSVGVLEKAI LRWRLKRRGF  840
RGLQVSQPEE KEGTEAVEDF YKTSQKQAED RLERSVVRVQ AMFRSKKAQQ DYRRMKLAHE  900
EAQLGMM
Expression -- Description ? help Back to Top
Source Description
UniprotTISSUE SPECIFICITY: Expressed in roots, stems, leaves, pollen, top of sepals and siliques. {ECO:0000269|PubMed:12218065, ECO:0000269|PubMed:14581622}.
Functional Description ? help Back to Top
Source Description
UniProtTranscription activator (PubMed:14581622). Binds to the DNA consensus sequence 5'-[ACG]CGCG[GTC]-3' (By similarity). Regulates transcriptional activity in response to calcium signals (Probable). Binds calmodulin in a calcium-dependent manner (By similarity). Involved in response to cold. Contributes together with CAMTA3 to the positive regulation of the cold-induced expression of DREB1A/CBF3, DREB1B/CBF1 and DREB1C/CBF2 (PubMed:28351986). {ECO:0000250|UniProtKB:Q8GSA7, ECO:0000269|PubMed:14581622, ECO:0000269|PubMed:28351986, ECO:0000305|PubMed:11925432}.
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00435DAPTransfer from AT4G16150Download
Motif logo
Cis-element ? help Back to Top
SourceLink
PlantRegMapXP_013604100.1
Regulation -- Description ? help Back to Top
Source Description
UniProtINDUCTION: By heat shock, UVB, wounding, abscisic acid, H(2)O(2) and salicylic acid. {ECO:0000269|PubMed:12218065}.
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieveRetrieve
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAY1282950.0AY128295.1 Arabidopsis thaliana AT4g16150/dl4115w mRNA, complete cds.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_013604100.10.0PREDICTED: calmodulin-binding transcription activator 5 isoform X2
SwissprotO234630.0CMTA5_ARATH; Calmodulin-binding transcription activator 5
TrEMBLA0A0D3DM500.0A0A0D3DM50_BRAOL; Uncharacterized protein
STRINGBo8g043280.10.0(Brassica oleracea)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G16150.10.0calmodulin binding;transcription regulators
Publications ? help Back to Top
  1. Ye J, et al.
    Arabidopsis formin3 directs the formation of actin cables and polarized growth in pollen tubes.
    Plant Cell, 2009. 21(12): p. 3868-84
    [PMID:20023198]
  2. Kidokoro S, et al.
    Different Cold-Signaling Pathways Function in the Responses to Rapid and Gradual Decreases in Temperature.
    Plant Cell, 2017. 29(4): p. 760-774
    [PMID:28351986]
  3. Lan Y,Liu X,Fu Y,Huang S
    Arabidopsis class I formins control membrane-originated actin polymerization at pollen tube tips.
    PLoS Genet., 2018. 14(11): p. e1007789
    [PMID:30418966]