PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

XP_013604100.1

Organism

Brassica oleracea

Taxonomic ID

3712

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Brassiceae; Brassica

Family

CAMTA

Protein Properties

Length: 907aa MW: 102980 Da PI: 7.8791

Description

CAMTA family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
XP_013604100.1	genome	NCBI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	CG-1	160.6	3e-50	30	146	3	118
CG-1 3 ke.kkrwlkneeiaaiLenfekheltlelktrpksgsliLynrkkvryfrkDGyswkkkkdgktvrEdhekLKvggvevlycyYahseenptfqr 96 +e +rwl+++ei+a+L n++ +++ ++ + pksg++++++rk++r+frkDG++wkkkkdgkt++E+he+LKvg+ e +++yYah+++nptf r XP_013604100.1 30 EEaYTRWLRPNEIHALLSNHKYFTINVKPVHLPKSGTIVFFDRKMLRNFRKDGHNWKKKKDGKTIKEAHEHLKVGNEERIHVYYAHGDDNPTFVR 124 55589**************************************************************************************** PP CG-1 97 rcywlLeeelekivlvhylevk 118 rcywlL++++e+ivlvhy+e++ XP_013604100.1 125 RCYWLLDKSQEHIVLVHYRETH 146 *****************985 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
PROSITE profile	PS51437	75.863	25	151	IPR005559	CG-1 DNA-binding domain
SMART	SM01076	1.1E-72	28	146	IPR005559	CG-1 DNA-binding domain
Pfam	PF03859	8.4E-45	32	144	IPR005559	CG-1 DNA-binding domain
SuperFamily	SSF81296	1.26E-13	371	457	IPR014756	Immunoglobulin E-set
CDD	cd00204	2.47E-13	557	667	No hit	No description
Pfam	PF12796	8.4E-7	558	637	IPR020683	Ankyrin repeat-containing domain
Gene3D	G3DSA:1.25.40.20	2.0E-15	558	670	IPR020683	Ankyrin repeat-containing domain
SuperFamily	SSF48403	2.33E-15	566	673	IPR020683	Ankyrin repeat-containing domain
PROSITE profile	PS50297	13.761	575	640	IPR020683	Ankyrin repeat-containing domain
PROSITE profile	PS50088	11.808	608	640	IPR002110	Ankyrin repeat
SMART	SM00248	2.7E-6	608	637	IPR002110	Ankyrin repeat
PROSITE profile	PS50096	7.053	757	782	IPR000048	IQ motif, EF-hand binding site
SMART	SM00015	160	772	794	IPR000048	IQ motif, EF-hand binding site
SMART	SM00015	2.3E-4	795	817	IPR000048	IQ motif, EF-hand binding site
PROSITE profile	PS50096	9.761	796	820	IPR000048	IQ motif, EF-hand binding site
Pfam	PF00612	8.4E-5	797	817	IPR000048	IQ motif, EF-hand binding site
SMART	SM00015	11	871	893	IPR000048	IQ motif, EF-hand binding site
PROSITE profile	PS50096	8.334	872	901	IPR000048	IQ motif, EF-hand binding site

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0005634	Cellular Component	nucleus
GO:0003677	Molecular Function	DNA binding
GO:0005515	Molecular Function	protein binding

Sequence ? help Back to Top
Protein Sequence Length: 907 aa Download sequence Send to blast
MAGVDSARLM GSEIHGFHTL QDLDIQTMLE EAYTRWLRPN EIHALLSNHK YFTINVKPVH 60 LPKSGTIVFF DRKMLRNFRK DGHNWKKKKD GKTIKEAHEH LKVGNEERIH VYYAHGDDNP 120 TFVRRCYWLL DKSQEHIVLV HYRETHEVQA APATPGNSYS SSTTDHLSAK PVAEDINSGV 180 SNACNTARSN SLVARNHEIS LHEINTLDWD ELLVEADMTN QSSPTEDDVL YFTEQLQTAP 240 MGSAQQGNHQ AVYNGSTDIP SYLGLGDPVY QNNSPCGARE FSSQHLHCVV DPNQQTRDSS 300 ATVADEQGDA LLNNGYGSQE SFGKWVNNFI SDSPGSVDDP SLEAVYTPGQ ESSAPPAVVH 360 SQSNIPEQVF NITDVSPAWA YSTEKTKILV TGFFHDSFQH FGRSNLFCIC GELRVPAEFL 420 QMGVYRCFLP PQSPGIVNLY LSADGTKPIS QLFSFEHRSV PVIEKAVPQE DQLYKWEEFE 480 FQVRLSHLLF TSSSKISVFS SRISPDNLLE AKKLASRTSH LLNSWAYLMK SIQANELPFD 540 QARDHLFELT LKNRLKEWLL EKVIENRNTK EYDSKGLGVI HLCAVLGYTW SILLFSWANI 600 SLDFRDKHGW TALHWAAYYG REKMVAALLS AGARPNLVTD PTKEYLGGCT AADIAQQKGY 660 EGLAAFLAEK CLVAQFRDMK MAGNISGNLE GVKAETSTNP GHSNEEEQSL KDTLAAYRTA 720 AEAAARIQGA FREHELKVRS KAVRFASKEE EAKNIIAAMK IQHAFRNYET RRKIAAAARI 780 QYMFQTWKMR REFLNMRKKA IKIQAVFRGF QVRRQYQKIT WSVGVLEKAI LRWRLKRRGF 840 RGLQVSQPEE KEGTEAVEDF YKTSQKQAED RLERSVVRVQ AMFRSKKAQQ DYRRMKLAHE 900 EAQLGMM

Sequence ? help Back to Top

Protein Sequence Length: 907 aa Download sequence Send to blast

MAGVDSARLM GSEIHGFHTL QDLDIQTMLE EAYTRWLRPN EIHALLSNHK YFTINVKPVH  60
LPKSGTIVFF DRKMLRNFRK DGHNWKKKKD GKTIKEAHEH LKVGNEERIH VYYAHGDDNP  120
TFVRRCYWLL DKSQEHIVLV HYRETHEVQA APATPGNSYS SSTTDHLSAK PVAEDINSGV  180
SNACNTARSN SLVARNHEIS LHEINTLDWD ELLVEADMTN QSSPTEDDVL YFTEQLQTAP  240
MGSAQQGNHQ AVYNGSTDIP SYLGLGDPVY QNNSPCGARE FSSQHLHCVV DPNQQTRDSS  300
ATVADEQGDA LLNNGYGSQE SFGKWVNNFI SDSPGSVDDP SLEAVYTPGQ ESSAPPAVVH  360
SQSNIPEQVF NITDVSPAWA YSTEKTKILV TGFFHDSFQH FGRSNLFCIC GELRVPAEFL  420
QMGVYRCFLP PQSPGIVNLY LSADGTKPIS QLFSFEHRSV PVIEKAVPQE DQLYKWEEFE  480
FQVRLSHLLF TSSSKISVFS SRISPDNLLE AKKLASRTSH LLNSWAYLMK SIQANELPFD  540
QARDHLFELT LKNRLKEWLL EKVIENRNTK EYDSKGLGVI HLCAVLGYTW SILLFSWANI  600
SLDFRDKHGW TALHWAAYYG REKMVAALLS AGARPNLVTD PTKEYLGGCT AADIAQQKGY  660
EGLAAFLAEK CLVAQFRDMK MAGNISGNLE GVKAETSTNP GHSNEEEQSL KDTLAAYRTA  720
AEAAARIQGA FREHELKVRS KAVRFASKEE EAKNIIAAMK IQHAFRNYET RRKIAAAARI  780
QYMFQTWKMR REFLNMRKKA IKIQAVFRGF QVRRQYQKIT WSVGVLEKAI LRWRLKRRGF  840
RGLQVSQPEE KEGTEAVEDF YKTSQKQAED RLERSVVRVQ AMFRSKKAQQ DYRRMKLAHE  900
EAQLGMM

Expression -- Description ? help Back to Top
Source	Description
Uniprot	TISSUE SPECIFICITY: Expressed in roots, stems, leaves, pollen, top of sepals and siliques. {ECO:0000269\|PubMed:12218065, ECO:0000269\|PubMed:14581622}.

Functional Description ? help Back to Top
Source	Description
UniProt	Transcription activator (PubMed:14581622). Binds to the DNA consensus sequence 5'-[ACG]CGCG[GTC]-3' (By similarity). Regulates transcriptional activity in response to calcium signals (Probable). Binds calmodulin in a calcium-dependent manner (By similarity). Involved in response to cold. Contributes together with CAMTA3 to the positive regulation of the cold-induced expression of DREB1A/CBF3, DREB1B/CBF1 and DREB1C/CBF2 (PubMed:28351986). {ECO:0000250\|UniProtKB:Q8GSA7, ECO:0000269\|PubMed:14581622, ECO:0000269\|PubMed:28351986, ECO:0000305\|PubMed:11925432}.

Binding Motif ? help Back to Top
Motif ID	Method	Source	Motif file
MP00435	DAP	Transfer from AT4G16150	Download

Cis-element ? help Back to Top
Source	Link
PlantRegMap	XP_013604100.1

Regulation -- Description ? help Back to Top
Source	Description
UniProt	INDUCTION: By heat shock, UVB, wounding, abscisic acid, H(2)O(2) and salicylic acid. {ECO:0000269\|PubMed:12218065}.

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	Retrieve

Annotation -- Nucleotide ? help Back to Top
Source	Hit ID	E-value	Description
GenBank	AY128295	0.0	AY128295.1 Arabidopsis thaliana AT4g16150/dl4115w mRNA, complete cds.

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_013604100.1	0.0	PREDICTED: calmodulin-binding transcription activator 5 isoform X2
Swissprot	O23463	0.0	CMTA5_ARATH; Calmodulin-binding transcription activator 5
TrEMBL	A0A0D3DM50	0.0	A0A0D3DM50_BRAOL; Uncharacterized protein
STRING	Bo8g043280.1	0.0	(Brassica oleracea)

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT4G16150.1	0.0	calmodulin binding;transcription regulators

Publications ? help Back to Top
Ye J, et al. Arabidopsis formin3 directs the formation of actin cables and polarized growth in pollen tubes. Plant Cell, 2009. 21(12): p. 3868-84 [PMID:20023198] Kidokoro S, et al. Different Cold-Signaling Pathways Function in the Responses to Rapid and Gradual Decreases in Temperature. Plant Cell, 2017. 29(4): p. 760-774 [PMID:28351986] Lan Y,Liu X,Fu Y,Huang S Arabidopsis class I formins control membrane-originated actin polymerization at pollen tube tips. PLoS Genet., 2018. 14(11): p. e1007789 [PMID:30418966]