PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

XP_013598393.1

Organism

Brassica oleracea

Taxonomic ID

3712

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Brassiceae; Brassica

Family

MYB_related

Protein Properties

Length: 961aa MW: 107327 Da PI: 8.9025

Description

MYB_related family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
XP_013598393.1	genome	NCBI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	Myb_DNA-binding	25.5	3.1e-08	38	72	3	38
SS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HH CS Myb_DNA-binding 3 rWTteEdellvdavkqlGggtWktIartmgkgRtlk 38 WT+ E e++++a +++G + Wk++a+ + +R++ XP_013598393.1 38 QWTKGELERFYEAYRKHGRD-WKKVAASVRSNRSAD 72 6***************77.*****99888875 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
SuperFamily	SSF46689	3.51E-7	37	82	IPR009057	Homeodomain-like
Pfam	PF00249	4.0E-7	38	74	IPR001005	SANT/Myb domain
Gene3D	G3DSA:1.10.10.60	5.7E-4	38	74	IPR009057	Homeodomain-like
CDD	cd00167	0.00231	39	74	No hit	No description
Pfam	PF06584	5.2E-31	557	657	IPR033471	DIRP domain
SMART	SM01135	1.4E-55	557	658	IPR033471	DIRP domain

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0003677	Molecular Function	DNA binding

Sequence ? help Back to Top
Protein Sequence Length: 961 aa Download sequence Send to blast
MAPRSVKKRV VTKEASSSPE IDKVKQRKKK LTDKLGPQWT KGELERFYEA YRKHGRDWKK 60 VAASVRSNRS ADMVEALFSM NRAYLSLPEG TASVAGLIAM MTDHYSVIEE SESEGEGRVD 120 SGVSRKYQKR KRAKAPPSDV REEVISPHSI ASTEGCLSFL KQAQVYGRER RATGKRTPRF 180 LVPSADQRDD TEGSTPPNQR AKKQLEADAD DDDDDDDILA LALANASRRV GASPHRRTEL 240 KNSTPNVKMS QAKEAQSKHH ASSMSRNVVR ISRDRRHIKG SPDRDGASLM DTEGVGNVEV 300 PRKEKNVRIV EAEGDTSGVS GEACNAPRDG LEALHALADL SALLTPGGLM ESESSAELKE 360 ERVANTRETV SSSHNREKAK QAGREDHSVL HVISAADSRK PKSAQELVDG NAVPRGELDT 420 SRRKRKPLHN KESAEDDNLK TLLNPRRAGQ GPAKQQKTAK TSEESCSTSD KKITRPNEAV 480 SATRVSGSGP ASLPQKPPNR RKISLKKSLQ ERTKSSEATH NKSHSYEAEP HHELLKEKVS 540 TCLSHPLVRR RCIFEWFYSA IDYPWFAKME FVDYLNHVGL GHVPRLTRLE WSVIKSSLGR 600 PRRFSERFVH EERDKLEQYR ESVRKQYTEL RAGAREVLPT DLAQPLSVGN RVIAIHPKTR 660 EIRDGKILTV DHNKHNVLFD ELGVEVVMDI DCMPLNPLEY TPDGLRRQMD NCLTVCGEAQ 720 VRKHPSSDAS VLFTPSELEN VDFSMSPTKK EDDRDRRVTT DQTYNTDNIK ARRDEIQRAL 780 MLQRTSDAQE MEPEMVGIVS GSRSIAQALV DAAMKAASSG KDDEDAGKML QQALDSIGEH 840 HQPLDNSIVS RMKHQDQANG SWDHHQSRSP SNTGEAMTEG LMGSGKNETQ MASELISSCV 900 ATWLMIQKCT EKQYPPGDVA QVMETAVSSL QPRCPQNMPI YREIQTCMGW IKNQIMALVK 960 T

Sequence ? help Back to Top

Protein Sequence Length: 961 aa Download sequence Send to blast

MAPRSVKKRV VTKEASSSPE IDKVKQRKKK LTDKLGPQWT KGELERFYEA YRKHGRDWKK  60
VAASVRSNRS ADMVEALFSM NRAYLSLPEG TASVAGLIAM MTDHYSVIEE SESEGEGRVD  120
SGVSRKYQKR KRAKAPPSDV REEVISPHSI ASTEGCLSFL KQAQVYGRER RATGKRTPRF  180
LVPSADQRDD TEGSTPPNQR AKKQLEADAD DDDDDDDILA LALANASRRV GASPHRRTEL  240
KNSTPNVKMS QAKEAQSKHH ASSMSRNVVR ISRDRRHIKG SPDRDGASLM DTEGVGNVEV  300
PRKEKNVRIV EAEGDTSGVS GEACNAPRDG LEALHALADL SALLTPGGLM ESESSAELKE  360
ERVANTRETV SSSHNREKAK QAGREDHSVL HVISAADSRK PKSAQELVDG NAVPRGELDT  420
SRRKRKPLHN KESAEDDNLK TLLNPRRAGQ GPAKQQKTAK TSEESCSTSD KKITRPNEAV  480
SATRVSGSGP ASLPQKPPNR RKISLKKSLQ ERTKSSEATH NKSHSYEAEP HHELLKEKVS  540
TCLSHPLVRR RCIFEWFYSA IDYPWFAKME FVDYLNHVGL GHVPRLTRLE WSVIKSSLGR  600
PRRFSERFVH EERDKLEQYR ESVRKQYTEL RAGAREVLPT DLAQPLSVGN RVIAIHPKTR  660
EIRDGKILTV DHNKHNVLFD ELGVEVVMDI DCMPLNPLEY TPDGLRRQMD NCLTVCGEAQ  720
VRKHPSSDAS VLFTPSELEN VDFSMSPTKK EDDRDRRVTT DQTYNTDNIK ARRDEIQRAL  780
MLQRTSDAQE MEPEMVGIVS GSRSIAQALV DAAMKAASSG KDDEDAGKML QQALDSIGEH  840
HQPLDNSIVS RMKHQDQANG SWDHHQSRSP SNTGEAMTEG LMGSGKNETQ MASELISSCV  900
ATWLMIQKCT EKQYPPGDVA QVMETAVSSL QPRCPQNMPI YREIQTCMGW IKNQIMALVK  960
T

Expression -- Description ? help Back to Top
Source	Description
Uniprot	TISSUE SPECIFICITY: Expressed ubiquitously in vegetative and reproductive tissues. {ECO:0000269\|PubMed:15246533}.

Cis-element ? help Back to Top
Source	Link
PlantRegMap	XP_013598393.1

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_013598393.1	0.0	PREDICTED: protein ALWAYS EARLY 1
Swissprot	Q6A331	0.0	ALY1_ARATH; Protein ALWAYS EARLY 1
TrEMBL	A0A0D3DCG7	0.0	A0A0D3DCG7_BRAOL; Uncharacterized protein
STRING	Bo7g093690.1	0.0	(Brassica oleracea)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Malvids	OGEM2962	22	41

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT3G21430.2	1e-73	DNA binding

Publications ? help Back to Top
Pfaff C, et al. ALY RNA-Binding Proteins Are Required for Nucleocytosolic mRNA Transport and Modulate Plant Growth and Development. Plant Physiol., 2018. 177(1): p. 226-240 [PMID:29540591]