PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Home  TFext  BLAST  Prediction  Download  Help  About  Links  PlantRegMap
(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID XP_013594767.1
Organism
Brassica oleracea
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Brassiceae; Brassica
Family B3
Protein Properties Length: 645aa    MW: 74666.9 Da    PI: 9.9375
Description B3 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
XP_013594767.1genomeNCBIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1B356.26.1e-1823110198
                     EEEE-..-HHHHTT-EE--HHH.HTT---..--SEEEEEETTS-EEEEEE..EEETTEEEE-TTHHHHHHHHT--TT-EEEEEE-SSSEE..EEE CS
              B3   1 ffkvltpsdvlksgrlvlpkkfaeehggkkeesktltledesgrsWevkliyrkksgryvltkGWkeFvkangLkegDfvvFkldgrsefelvvk 95 
                     ffkv      ++s++lv+p  f+ ++ ++k+ +k ++l de gr W+v+     k g +v+++GW++F++++ L+ gDf++F+++g+s+f   v+
  XP_013594767.1  23 FFKVY--LPEFSSHQLVIPQAFI-NI-LDKPLPKRVVLVDEIGRLWDVET----KTGVVVFRQGWEKFANEHSLEFGDFLLFRYNGESRF--DVT 107
                     77777..78999***********.44.567899*****************....7778***************************99999..888 PP

                     EE- CS
              B3  96 vfr 98 
                     +f 
  XP_013594767.1 108 IFA 110
                     876 PP
2B340.74.2e-13218310898
                     -HHHHTT-EE--HHH.HTT---..--SEEEEEETTS-EEEEEE..EEETTEEEE-.TTHHHHHHHHT--TT-EEEEEE-..SS.SEE..EEEEE- CS
              B3   8 sdvlksgrlvlpkkfaeehggkkeesktltledesgrsWevkliyrkksgryvlt.kGWkeFvkangLkegDfvvFkld..gr.sefelvvkvfr 98 
                       v+++++l +p +f++++g++ ee++++ l de+g++W +k+  +k++++y+++ + W  F+++++L+    ++F+++  ++ ++ + +v++fr
  XP_013594767.1 218 IAVGSLRLLEIPTTFLKANGIELEEGQDIELCDENGKKWPLKI--EKHGRGYIFSyDSWLCFCESHNLRNPNKCLFEFIvsSNgTCSQILVRIFR 310
                     56889999***********98889999****************..******888779********************663355677777888877 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF1019361.14E-2120114IPR015300DNA-binding pseudobarrel domain
Gene3DG3DSA:2.40.330.104.9E-2221114IPR015300DNA-binding pseudobarrel domain
PROSITE profilePS5086314.7921112IPR003340B3 DNA binding domain
SMARTSM010195.7E-1723112IPR003340B3 DNA binding domain
CDDcd100173.65E-1823109No hitNo description
PfamPF023627.6E-1623109IPR003340B3 DNA binding domain
Gene3DG3DSA:2.40.330.101.3E-14207310IPR015300DNA-binding pseudobarrel domain
SuperFamilySSF1019361.47E-14207310IPR015300DNA-binding pseudobarrel domain
PROSITE profilePS5086311.364211312IPR003340B3 DNA binding domain
SMARTSM010194.2E-11214312IPR003340B3 DNA binding domain
PfamPF023621.6E-10218311IPR003340B3 DNA binding domain
CDDcd100172.41E-11220310No hitNo description
PfamPF141111.4E-9376463IPR025558Domain of unknown function DUF4283
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 645 aa     Download sequence    Send to blast
MVETSEKTSS PSSSSHGRKD LEFFKVYLPE FSSHQLVIPQ AFINILDKPL PKRVVLVDEI  60
GRLWDVETKT GVVVFRQGWE KFANEHSLEF GDFLLFRYNG ESRFDVTIFA KDGCKKDLDR  120
FRVSVEKEPV IVKPVGISIK PEPWEDCGKR VMQNRKRVLV REEASVLGDI EPGHRRNTRK  180
KVNRSRDPRE MSWVPEKKHK GSEEPVYKPK NPHFVRNIAV GSLRLLEIPT TFLKANGIEL  240
EEGQDIELCD ENGKKWPLKI EKHGRGYIFS YDSWLCFCES HNLRNPNKCL FEFIVSSNGT  300
CSQILVRIFR GTLLTTAAKS GYHPFANLVV FTLFRNDEFT IQPNPPRREP SETRRHVDLT  360
EEDEIIRIPA CDLTAVSERF KRTLIGRVLH RGGRSVEAMI ALFPRACIWN VEGRACGVNL  420
GNGRFRFDFD KEKDLNMVLN KRPCHFNHWI FALEHLGKKL DIDAMNARIQ VSIDADRPLK  480
LEARIEFPNG DFGKVYMTYE GSLSLAYQAL TGPVGNFRGN VPNNKRPRFP NGDVSQRSPT  540
RAGFPGQSKG EKRHKESESY WTTKANSGRD APPKSMDRRR LEGDERYPHH QGKTIVWNRL  600
DDRPDGRDIK KPVDYNSRPR QTSMERHERQ RGRESYRPRE RHYSH
Cis-element ? help Back to Top
SourceLink
PlantRegMapXP_013594767.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_013594767.10.0PREDICTED: uncharacterized protein LOC106302914
TrEMBLA0A078FKU10.0A0A078FKU1_BRANA; BnaC07g16400D protein
TrEMBLA0A0D3D8A50.0A0A0D3D8A5_BRAOL; Uncharacterized protein
STRINGBo7g064220.10.0(Brassica oleracea)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM128022130
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G66980.11e-121B3 family protein