PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | XP_013593766.1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Brassiceae; Brassica
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Family | NAC | ||||||||
Protein Properties | Length: 460aa MW: 51674 Da PI: 4.5388 | ||||||||
Description | NAC family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | NAM | 101.3 | 1.3e-31 | 55 | 189 | 1 | 128 |
NAM 1 lppGfrFhPtdeelvveyLkkkvegkk.....leleevikevd....iykvePwdLpkkvkaeekewyfFskrdkkyatgkrknratk.....sg 81 lp+G++F+P+d e++++ L+k + + +e+i++vd i++++P++Lp vk++ + +fF+++ k+y+tg+rk+r+++ + XP_013593766.1 55 LPRGVKFDPSDPEIIWHLLAKTGSLGLtphpfI--DEFIPTVDqddgICYTHPKNLP-GVKHDGTMSHFFHRAIKAYSTGTRKRRKIHdddlgDV 146 799************888887743332354332..334666655567**********.677788999******************8655565589 PP NAM 82 yWkatgkdkevlskkgelvglkktLvfykgrapkgektdWvmheyrl 128 +W++tg++k+v+ +g + g+kk++v+y+g++ +kt+Wvmh+y+l XP_013593766.1 147 RWHKTGRTKTVVL-DGVQRGCKKIMVLYEGKS---VKTNWVMHQYHL 189 9************.99************7665...56********98 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
SuperFamily | SSF101941 | 1.44E-37 | 40 | 208 | IPR003441 | NAC domain |
PROSITE profile | PS51005 | 31.155 | 55 | 208 | IPR003441 | NAC domain |
Pfam | PF02365 | 8.2E-13 | 56 | 189 | IPR003441 | NAC domain |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0003677 | Molecular Function | DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 460 aa Download sequence Send to blast |
MTGRAWLVDK NRIATKILSA SDPCPTVWNT NPTRHCPNCR HVIDNSHEVD DWPGLPRGVK 60 FDPSDPEIIW HLLAKTGSLG LTPHPFIDEF IPTVDQDDGI CYTHPKNLPG VKHDGTMSHF 120 FHRAIKAYST GTRKRRKIHD DDLGDVRWHK TGRTKTVVLD GVQRGCKKIM VLYEGKSVKT 180 NWVMHQYHLG TDEDEKDGEY VVSKIFYQQP QQQGVLKKGG DKDKAEEEVS EDIFAAATTT 240 PKADPVTPRL FTPEPSRQAV PLCSDSHLPN EYATPQEVSL AESKTSEAMY MEDEVQGAQR 300 DHERPSSEDE PAPETVIENG DNEIMRFDKE DENDQENKEG EENHEAEEEG NWLDSDGSQF 360 ILNSQQLVEA LSLCDDLLQV GSQDTNNGGG GGLRNKQQPC FGDYAHLGGT DDFKRDLEDC 420 QKLIIDPCNI ELDTPPEFRL SQLEFGSQES FLAWGTGKTD |
Expression -- Description ? help Back to Top | ||||||
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Source | Description | |||||
Uniprot | TISSUE SPECIFICITY: Expressed in shoot and root apical meristems, in lateral root primordia, in the vasculature of young leaves and in the root stele. {ECO:0000269|PubMed:23907539}. |
Functional Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | Transcription factor regulating the transcriptional activation response to gamma irradiation (PubMed:19549833). Required for stem-cell death induced by UVB or by gamma irradiation (PubMed:20634150). Not required for ATM activation, but participates in pathways governed by both ATM and ATR sensor kinases (PubMed:19549833). Involved in DNA damage response (DDR) system that regulates cell cycle arrest (PubMed:24399300). Functional homolog of animal p53 (PubMed:24736489). Regulates SMR5 and SMR7 transcription (PubMed:24399300). Regulates DNA repair and cytokinin signaling separately and plays a key role in controlling lateral root formation under genotoxic stress. {ECO:0000269|PubMed:19549833, ECO:0000269|PubMed:20634150, ECO:0000269|PubMed:24399300, ECO:0000305|PubMed:24736489}. |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | XP_013593766.1 |
Regulation -- Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | INDUCTION: Not induced by zeocin or ionizing radiation treatment. {ECO:0000269|PubMed:23907539}. |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | AC189476 | 1e-161 | AC189476.2 Brassica rapa subsp. pekinensis cultivar Inbred line 'Chiifu' clone KBrB080N15, complete sequence. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_013593766.1 | 0.0 | PREDICTED: NAC domain-containing protein 8-like | ||||
Swissprot | Q6NQK2 | 0.0 | NAC8_ARATH; SUPPRESSOR OF GAMMA RESPONSE 1 | ||||
TrEMBL | A0A0D3D6R3 | 0.0 | A0A0D3D6R3_BRAOL; Uncharacterized protein | ||||
STRING | Bo7g052860.1 | 0.0 | (Brassica oleracea) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Malvids | OGEM9707 | 27 | 36 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT1G25580.1 | 0.0 | NAC family protein |