PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID XP_013593036.1
Organism
Brassica oleracea
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Brassiceae; Brassica
Family GRAS
Protein Properties Length: 461aa    MW: 51219.1 Da    PI: 4.9986
Description GRAS family protein
Gene Model
Gene Model ID Type Source Coding Sequence
XP_013593036.1genomeNCBIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1GRAS322.39.9e-991004602374
            GRAS   2 velLlecAeavssgdlelaqalLarlsel.aspdgdpmqRlaayfteALaarlarsvselykalppsetseknsseelaalklfsevsPilkfsh 95 
                     +e L++++++++s++l+la+ +L++l+++ ++++g+p+qR+a+yf+eAL + l++       + + +  s+++ ++++ a k fs +sPi+ fsh
  XP_013593036.1 100 IEDLIRVVDCIESDELHLAHVVLSQLNQRlQTSAGRPLQRAAFYFKEALGSLLTG-------TNRNQLFSWSDIVQKIRAIKEFSGISPIPLFSH 187
                     678*************************9899999********************.......66888888899********************** PP

            GRAS  96 ltaNqaIleavege...ervHiiDfdisqGlQWpaLlqaLasRpegppslRiTgvgspesgskeeleetgerLakfAeelgvpfefnvlvakrle 187
                     +taNqaIl++++++     vH++Df+i+ G+Q+++L++++a+++++   lR+T+v++  ++ + e++ ++e+L++fA+e++++f+++++++k++e
  XP_013593036.1 188 FTANQAILDSLSSQsssPFVHVVDFEIGFGGQYASLMREIAEKSANGGFLRVTAVVA--EDCAVETRLVKENLTQFAAEMKIRFQIEFVLMKTFE 280
                     ***********99977789**************************************..55********************************** PP

            GRAS 188 dleleeLrvkpgEalaVnlvlqlhrlldesvsleserdevLklvkslsPkvvvvveqe..adh.nsesFlerflealeyysalfdsleaklpres 279
                      l+++++r+  gE ++V ++ +++r +     +     e+++ + ++sP+vvv+v++e  +++ +s+sF ++f++a+e+y+++++sl+a +p+ +
  XP_013593036.1 281 ILSFKAIRFVDGERTVVLISPAIFRRV---IGI----AEFVNNLGRVSPNVVVFVDSEgcTETaGSGSFRREFVSAFEFYTMVLESLDAAAPPGD 368
                     *************************99...444....56*******************754557899**************************** PP

            GRAS 280 eerikvErellgreivnvvacegaerrerhetlekWrerleeaGFkpvplsekaakqaklllrkvksdgyrveeesgslvlgWkdrpLvsvSaWr 374
                       ++ vE +ll+++i+ +v ++ ++   r    ++Wre+l +aG++pv+ls++a+ qa++ll+k +++g++v +++g+lvl+W++r+Lv++SaWr
  XP_013593036.1 369 LVKKIVETFLLRPKISAAVETAANR---RSAGQMTWREMLCAAGMRPVQLSQFANFQAECLLEKAQVRGFHVAKRQGELVLCWHGRALVATSAWR 460
                     ********************99998...899999************************************************************8 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5098539.74273440IPR005202Transcription factor GRAS
PfamPF035143.4E-96100460IPR005202Transcription factor GRAS
Sequence ? help Back to Top
Protein Sequence    Length: 461 aa     Download sequence    Send to blast
MKLQASSPQD NQPSNTTNNS TDSNHLSMDE HAMRSMDWDS IMKELEVDDD SAPYQLQPSS  60
FNLPVFPDID SSDVYPGPNQ ITGYGFNSLD SVDNGGFDYI EDLIRVVDCI ESDELHLAHV  120
VLSQLNQRLQ TSAGRPLQRA AFYFKEALGS LLTGTNRNQL FSWSDIVQKI RAIKEFSGIS  180
PIPLFSHFTA NQAILDSLSS QSSSPFVHVV DFEIGFGGQY ASLMREIAEK SANGGFLRVT  240
AVVAEDCAVE TRLVKENLTQ FAAEMKIRFQ IEFVLMKTFE ILSFKAIRFV DGERTVVLIS  300
PAIFRRVIGI AEFVNNLGRV SPNVVVFVDS EGCTETAGSG SFRREFVSAF EFYTMVLESL  360
DAAAPPGDLV KKIVETFLLR PKISAAVETA ANRRSAGQMT WREMLCAAGM RPVQLSQFAN  420
FQAECLLEKA QVRGFHVAKR QGELVLCWHG RALVATSAWR F
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
5b3g_A1e-249345913378Protein SCARECROW
5b3h_A1e-249345912377Protein SCARECROW
5b3h_D1e-249345912377Protein SCARECROW
Search in ModeBase
Expression -- Description ? help Back to Top
Source Description
UniprotTISSUE SPECIFICITY: Expressed in seedlings, roots, leaves and flowers. {ECO:0000269|PubMed:18500650}.
Functional Description ? help Back to Top
Source Description
UniProtProbable transcription factor involved in plant development. {ECO:0000250}.
Cis-element ? help Back to Top
SourceLink
PlantRegMapXP_013593036.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAY6644050.0AY664405.1 Brassica napus SCARECROW-like protein (SCL1) mRNA, complete cds.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_013593036.10.0PREDICTED: scarecrow-like protein 15
SwissprotO232100.0SCL15_ARATH; Scarecrow-like protein 15
TrEMBLA0A0D3DI130.0A0A0D3DI13_BRAOL; Uncharacterized protein
STRINGBo7g118110.10.0(Brassica oleracea)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM42912857
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G36710.10.0GRAS family protein
Publications ? help Back to Top
  1. Ding Y, et al.
    Four distinct types of dehydration stress memory genes in Arabidopsis thaliana.
    BMC Plant Biol., 2013. 13: p. 229
    [PMID:24377444]