PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID XP_013592629.1
Organism
Brassica oleracea
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Brassiceae; Brassica
Family CO-like
Protein Properties Length: 405aa    MW: 46104.1 Da    PI: 6.5111
Description CO-like family protein
Gene Model
Gene Model ID Type Source Coding Sequence
XP_013592629.1genomeNCBIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-B_box24.94.2e-081457340
        zf-B_box  3 erkCpeHeekelqlfCedCqqllCedClleeHkg......Htvv 40
                    +r C+++ +k+++++C  ++ +lC+ C  + H+       H++v
  XP_013592629.1 14 ARACDNCVKKRARWYCAADDAFLCHFCDGSVHSAnplacrHERV 57
                    578*****************************668888888876 PP
2CCT68.51.8e-23356399144
             CCT   1 ReaallRYkeKrktRkFeKkirYesRKavAesRpRvKGrFvkqa 44 
                     Rea+++RY+eKr+tR+F+KkirYe+RK +Ae+RpR+KGrFvk++
  XP_013592629.1 356 REARVSRYREKRRTRLFSKKIRYEVRKLNAEKRPRMKGRFVKRS 399
                     9*****************************************97 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5011910.1391259IPR000315B-box-type zinc finger
SMARTSM003362.2E-71259IPR000315B-box-type zinc finger
PfamPF006431.9E-61457IPR000315B-box-type zinc finger
CDDcd000212.47E-81559No hitNo description
PfamPF062035.2E-18356398IPR010402CCT domain
PROSITE profilePS5101716.083356398IPR010402CCT domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0005622Cellular Componentintracellular
GO:0005515Molecular Functionprotein binding
GO:0008270Molecular Functionzinc ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 405 aa     Download sequence    Send to blast
MMKSLANAVG GKTARACDNC VKKRARWYCA ADDAFLCHFC DGSVHSANPL ACRHERVRLK  60
TASAGKHRHA SSSPPHPATW HQGFTRKART PRGGKKIHTM VFHDLVPGMS LEDQIYEVEE  120
QLIFEVPMLN PMGYEQCLKE SVGTKIVFPM MPVCFKSSEE EDNNTESCLN GLFPTQMELA  180
QFSADVETLL GGGSDREFHA MEELGFGEML KIEKEEVKEE EEVATREVCD LDDANETSPF  240
EISFDYESSH KTAFEEDDEK EDVMKNLVDV GVNEMSGRIK EEEKEKVLML RLDYENVISA  300
WGSHRTPWTA LESSEIDLDM LRRQTNSVCE SGGEAHHHNH FRGLGLHMRE AGDGGREARV  360
SRYREKRRTR LFSKKIRYEV RKLNAEKRPR MKGRFVKRSS IAAAH
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1366382RRTRLFSKKIRYEVRKL
Cis-element ? help Back to Top
SourceLink
PlantRegMapXP_013592629.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_013592629.10.0PREDICTED: zinc finger protein CONSTANS-LIKE 6-like
SwissprotQ8LG760.0COL6_ARATH; Zinc finger protein CONSTANS-LIKE 6
TrEMBLA0A0D3CXV10.0A0A0D3CXV1_BRAOL; Uncharacterized protein
STRINGBo6g097080.10.0(Brassica oleracea)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM24672767
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G68520.10.0B-box type zinc finger protein with CCT domain
Publications ? help Back to Top
  1. Ding Y, et al.
    Four distinct types of dehydration stress memory genes in Arabidopsis thaliana.
    BMC Plant Biol., 2013. 13: p. 229
    [PMID:24377444]