PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID XP_013592608.1
Organism
Brassica oleracea
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Brassiceae; Brassica
Family ERF
Protein Properties Length: 334aa    MW: 36636 Da    PI: 5.8791
Description ERF family protein
Gene Model
Gene Model ID Type Source Coding Sequence
XP_013592608.1genomeNCBIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1AP264.32.5e-20144193255
             AP2   2 gykGVrwdkkrgrWvAeIrdpsengkrkrfslgkfgtaeeAakaaiaarkkleg 55 
                      y+GVr+++ +g+WvAeIr p++   r+r +lg+f+taeeAa a++ a+ kl+g
  XP_013592608.1 144 LYRGVRQRH-WGKWVAEIRLPRN---RTRLWLGTFDTAEEAALAYDTAAYKLRG 193
                     59******9.**********955...5*************************98 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
CDDcd000187.05E-33143203No hitNo description
PROSITE profilePS5103223.327144201IPR001471AP2/ERF domain
SuperFamilySSF541712.48E-23144202IPR016177DNA-binding domain
Gene3DG3DSA:3.30.730.105.5E-32144202IPR001471AP2/ERF domain
SMARTSM003801.1E-37144207IPR001471AP2/ERF domain
PfamPF008475.2E-14145193IPR001471AP2/ERF domain
PRINTSPR003673.1E-11145156IPR001471AP2/ERF domain
PRINTSPR003673.1E-11167183IPR001471AP2/ERF domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0009409Biological Processresponse to cold
GO:0009414Biological Processresponse to water deprivation
GO:0009611Biological Processresponse to wounding
GO:0009736Biological Processcytokinin-activated signaling pathway
GO:0009873Biological Processethylene-activated signaling pathway
GO:0010017Biological Processred or far-red light signaling pathway
GO:0045595Biological Processregulation of cell differentiation
GO:0071472Biological Processcellular response to salt stress
GO:0005634Cellular Componentnucleus
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0043565Molecular Functionsequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 334 aa     Download sequence    Send to blast
MEAAMNLNSS RAFQQPDSFG GGGELMEALL PFIKSASDSP SSSASAFINP AASAFPLPTF  60
PGYYPEHYLT QPFSYGSDLQ QTGSLIGLNN LSSSQIHQIQ SQIHHSLPLP PTRSNLSPKP  120
LLMKQPGVAG SCFAYGAPPK PAKLYRGVRQ RHWGKWVAEI RLPRNRTRLW LGTFDTAEEA  180
ALAYDTAAYK LRGDFARLNF PNLRHNGSHV GGEFGEYKPL HSTVDAKLEA ICKSMAETEK  240
QEKTTKASKK RASTAALKTE AVKAEENSNS IGESPPVTEF VESAGSSPLS ELTFADAEEQ  300
PQWNETFALE KYPSYEIDWD SILADQFVCN LVED
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1gcc_A8e-20143201160ETHYLENE RESPONSIVE ELEMENT BINDING FACTOR 1
Search in ModeBase
Expression -- Description ? help Back to Top
Source Description
UniprotTISSUE SPECIFICITY: Mostly expressed in roots and leaves. Also detected in flowers and stems. {ECO:0000269|PubMed:9192694}.
Functional Description ? help Back to Top
Source Description
UniProtProbably acts as a transcriptional activator. Binds to the GCC-box pathogenesis-related promoter element. May be involved in the regulation of gene expression by stress factors and by components of stress signal transduction pathways (By similarity). {ECO:0000250}.
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00026PBMTransfer from AT1G78080Download
Motif logo
Cis-element ? help Back to Top
SourceLink
PlantRegMapXP_013592608.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieveRetrieve
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_013592608.10.0PREDICTED: ethylene-responsive transcription factor RAP2-4-like
SwissprotQ8H1E41e-170RAP24_ARATH; Ethylene-responsive transcription factor RAP2-4
TrEMBLA0A0D3CW190.0A0A0D3CW19_BRAOL; Uncharacterized protein
TrEMBLA0A3P6GBJ70.0A0A3P6GBJ7_BRAOL; Uncharacterized protein
STRINGBo6g081850.10.0(Brassica oleracea)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM27162670
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G78080.11e-124related to AP2 4
Publications ? help Back to Top
  1. Pati A,Vasquez-Robinet C,Heath LS,Grene R,Murali TM
    XcisClique: analysis of regulatory bicliques.
    BMC Bioinformatics, 2006. 7: p. 218
    [PMID:16630346]
  2. Ding Y, et al.
    Four distinct types of dehydration stress memory genes in Arabidopsis thaliana.
    BMC Plant Biol., 2013. 13: p. 229
    [PMID:24377444]
  3. Iwase A, et al.
    WIND1-based acquisition of regeneration competency in Arabidopsis and rapeseed.
    J. Plant Res., 2015. 128(3): p. 389-97
    [PMID:25810222]
  4. Ikeuchi M, et al.
    PRC2 represses dedifferentiation of mature somatic cells in Arabidopsis.
    Nat Plants, 2015. 1: p. 15089
    [PMID:27250255]
  5. Iwase A, et al.
    WIND1 Promotes Shoot Regeneration through Transcriptional Activation of ENHANCER OF SHOOT REGENERATION1 in Arabidopsis.
    Plant Cell, 2017. 29(1): p. 54-69
    [PMID:28011694]