PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | XP_013584008.1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Brassiceae; Brassica
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Family | SRS | ||||||||
Protein Properties | Length: 318aa MW: 35599 Da PI: 9.7371 | ||||||||
Description | SRS family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | DUF702 | 25.1 | 5e-08 | 30 | 75 | 5 | 49 |
DUF702 5 tasCqdCGnqakkdCaheRCRtCCksrgfdCathvkstW.vpaakr 49 + +C +CGn a+ C ++ C+ CC + C hv +a+k+ XP_013584008.1 30 KPKCIQCGNVARSRCPFQSCKGCCSRAENPCPIHVLKGVaTSAEKT 75 569*******************************955430333333 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
Pfam | PF05142 | 3.7E-4 | 32 | 75 | IPR007818 | Protein of unknown function DUF702 |
Sequence ? help Back to Top |
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Protein Sequence Length: 318 aa Download sequence Send to blast |
MAGPSPSPSL TNNGLSATVT PPTNLRGRNK PKCIQCGNVA RSRCPFQSCK GCCSRAENPC 60 PIHVLKGVAT SAEKTAPSTP SSDHKASEGT PGSSTRFSSI RHLSSNFAQF NNLNATARQR 120 KPLTIKDAQA LNEWRFTKLK EYRDRNIEAE DEAFDRYLSN VSLLEEAFSL AFVPEEAAAS 180 ERNKEERAVL ELKLRLRSNS ARTESFKKRI NETIKAGLVK VQKRGGKSDD QDEVKRRIKR 240 RKWEEKTSAL NEIIDKLNKA RTEEDLKSCT ELKSKHYGQV SSSSTSEHNK IFPAYVRKVE 300 VCEDAFLQET GEQLQSFD |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | XP_013584008.1 |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_013584008.1 | 0.0 | PREDICTED: uncharacterized protein LOC106292886 | ||||
Refseq | XP_022571489.1 | 0.0 | uncharacterized protein LOC111213925 | ||||
TrEMBL | A0A0D3CGM6 | 0.0 | A0A0D3CGM6_BRAOL; Uncharacterized protein | ||||
TrEMBL | A0A3P6FBU7 | 0.0 | A0A3P6FBU7_BRAOL; Uncharacterized protein | ||||
STRING | Bo5g086960.1 | 0.0 | (Brassica oleracea) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Malvids | OGEM7362 | 13 | 17 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT1G32730.1 | 1e-167 |