PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | XP_011398674.1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Chlorophyta; Trebouxiophyceae; Chlorellales; Chlorellaceae; Auxenochlorella
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Family | NF-YC | ||||||||
Protein Properties | Length: 140aa MW: 14427.5 Da PI: 4.8101 | ||||||||
Description | NF-YC family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | NF-YC | 47.7 | 3.4e-15 | 39 | 119 | 18 | 98 |
NF-YC 18 nhelPlarikkilkadedvkmisaeaPvllskacelfileltlrswlhaeenkrrtlkksdiaaavtrtdifdflvdivpr 98 + l l r+k ++k d dvk +s+ea ++ka el++ +t r+ ++ r+ l d+a+av++ + dfl d++p+ XP_011398674.1 39 QLILTLGRVKTLIKEDADVKFVSSEAYFAIAKATELLLEAMTERAAQPMLQSGRSQLGYGDVAQAVSSWQSLDFLGDVIPH 119 4568899************************************************************************97 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
SuperFamily | SSF47113 | 2.85E-16 | 35 | 121 | IPR009072 | Histone-fold |
Gene3D | G3DSA:1.10.20.10 | 7.9E-19 | 43 | 118 | IPR009072 | Histone-fold |
Pfam | PF00808 | 8.6E-9 | 44 | 104 | IPR003958 | Transcription factor CBF/NF-Y/archaeal histone domain |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0005634 | Cellular Component | nucleus | ||||
GO:0046982 | Molecular Function | protein heterodimerization activity |
Sequence ? help Back to Top |
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Protein Sequence Length: 140 aa Download sequence Send to blast |
MEAPSSAPAA EPQFLASGTG TEPAQPSATG DGPSTSKAQL ILTLGRVKTL IKEDADVKFV 60 SSEAYFAIAK ATELLLEAMT ERAAQPMLQS GRSQLGYGDV AQAVSSWQSL DFLGDVIPHK 120 IPAGVVLQKM LAAKAAAAVA |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_011398674.1 | 2e-95 | Nuclear transcription factor Y subunit C-2 | ||||
TrEMBL | A0A087SJ74 | 5e-94 | A0A087SJ74_AUXPR; Nuclear transcription factor Y subunit C-2 | ||||
STRING | A0A087SJ74 | 9e-95 | (Auxenochlorella protothecoides) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Chlorophytae | OGCP10859 | 3 | 3 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT1G56170.2 | 2e-12 | nuclear factor Y, subunit C2 |
Link Out ? help Back to Top | |
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Entrez Gene | 23614011 |