PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

XP_011100792.1

Organism

Sesamum indicum

Taxonomic ID

4182

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Lamiales; Pedaliaceae; Sesamum

Family

CAMTA

Protein Properties

Length: 901aa MW: 102078 Da PI: 7.4578

Description

CAMTA family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
XP_011100792.1	genome	NCBI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	CG-1	166	6.3e-52	2	119	2	118
CG-1 2 lke.kkrwlkneeiaaiLenfekheltlelktrpksgsliLynrkkvryfrkDGyswkkkkdgktvrEdhekLKvggvevlycyYahseenptfq 95 ++e k+rwl+++ei+aiL n++ +++ ++ + pksg+++L++rk++r+frkDG++wkkkkdgktv+E+he+LKvg+ e +++yYah+e+nptf XP_011100792.1 2 MEEaKARWLRPNEIHAILCNHKYFTVYVKPVNLPKSGTIVLFDRKMLRNFRKDGHNWKKKKDGKTVKEAHEHLKVGNEERIHVYYAHGEDNPTFV 96 45669**************************************************************************************** PP CG-1 96 rrcywlLeeelekivlvhylevk 118 rrcywlL+++le+ivlvhy+e++ XP_011100792.1 97 RRCYWLLDKSLEHIVLVHYRETQ 119 ******************986 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
SMART	SM01076	3.5E-77	1	119	IPR005559	CG-1 DNA-binding domain
PROSITE profile	PS51437	77.584	1	124	IPR005559	CG-1 DNA-binding domain
Pfam	PF03859	6.7E-46	4	117	IPR005559	CG-1 DNA-binding domain
SuperFamily	SSF81296	3.08E-9	354	439	IPR014756	Immunoglobulin E-set
CDD	cd00204	1.25E-13	538	648	No hit	No description
SuperFamily	SSF48403	3.26E-16	539	652	IPR020683	Ankyrin repeat-containing domain
Gene3D	G3DSA:1.25.40.20	4.9E-15	539	651	IPR020683	Ankyrin repeat-containing domain
PROSITE profile	PS50297	14.345	547	621	IPR020683	Ankyrin repeat-containing domain
SMART	SM00248	5.1E-6	589	618	IPR002110	Ankyrin repeat
PROSITE profile	PS50088	11.434	589	621	IPR002110	Ankyrin repeat
Pfam	PF00023	8.9E-5	590	620	IPR002110	Ankyrin repeat
SuperFamily	SSF52540	5.31E-8	696	803	IPR027417	P-loop containing nucleoside triphosphate hydrolase
PROSITE profile	PS50096	7.163	737	763	IPR000048	IQ motif, EF-hand binding site
SMART	SM00015	14	752	774	IPR000048	IQ motif, EF-hand binding site
PROSITE profile	PS50096	7.089	756	782	IPR000048	IQ motif, EF-hand binding site
SMART	SM00015	0.0012	775	797	IPR000048	IQ motif, EF-hand binding site
PROSITE profile	PS50096	10.091	776	800	IPR000048	IQ motif, EF-hand binding site
Pfam	PF00612	9.8E-4	777	797	IPR000048	IQ motif, EF-hand binding site
SMART	SM00015	35	855	877	IPR000048	IQ motif, EF-hand binding site
PROSITE profile	PS50096	8.114	857	885	IPR000048	IQ motif, EF-hand binding site

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0005634	Cellular Component	nucleus
GO:0003677	Molecular Function	DNA binding
GO:0005515	Molecular Function	protein binding

Sequence ? help Back to Top
Protein Sequence Length: 901 aa Download sequence Send to blast
MMEEAKARWL RPNEIHAILC NHKYFTVYVK PVNLPKSGTI VLFDRKMLRN FRKDGHNWKK 60 KKDGKTVKEA HEHLKVGNEE RIHVYYAHGE DNPTFVRRCY WLLDKSLEHI VLVHYRETQE 120 LQGSPATPVN SNSNSAGSDL SATWPMSEES DSAVDRVYYG STGSYLECHD SVTVKHHEQR 180 LYEINTLEWD ELLVPDDPHR LITRQQGTTA GFELQNQYQM NSYRINDDAP SNNKVSPECS 240 TNSFSEPVAG RSSINYTSPN NMSYQTVEQD TIVNSETMVS GLMPSGGAGS LYNLGKDGLQ 300 SQDSFGRWVT HIIAESPESV DDHTLESSNL AGHQSSTYPL MDSHDSSPLG PIFTITDVSP 360 AWALSTEETK ILVVGFFNEG QLPYSESKLY LACGDSLLPV DVVQAGVFRC LIPPQAPKLG 420 NLYITFDGHK PISQVLTFEI RAPVQPGTVS FENKTDWEEF QLQMRLAHLL FSSSKGLSIY 480 STKLSPTALK EAKAFAQKTS HISDGWLHMA KVIEDTKMSF PQAKDKLFEL TLQNRLQEWL 540 LEKVVAGCKI SERDEQGLGV IHLCSILGYT WAVYPYSWSG LSLDYRDKFG WTALHWAAYY 600 GREKMVATLL SAGAKPNLVT DPTSQNPGGC SAHDLASKNG YDGLAAYLAE KALVAQFDDM 660 TLAGNVSGSL QTTTNETVNP GNFSEDELYL KDTLAAYRTA ADAAARIQTA FREHSLKIRT 720 KVVESSNPEL EARNIVAAMK IQHAFRNYET RKKIVAAARI QHRFRTWKIR KEFLNMRRQA 780 IKIQAMFRGF QVRRQYRKIV WSVGVLEKAI LRWRLKRKGF RGLQVQPAET PREPNEESDV 840 EEDFFQASRK QAEERVEQSV VRVQAMFRSK QAQEAYRRMK LEHNKAKLEY EGLLHPDLQM 900 G

Sequence ? help Back to Top

Protein Sequence Length: 901 aa Download sequence Send to blast

MMEEAKARWL RPNEIHAILC NHKYFTVYVK PVNLPKSGTI VLFDRKMLRN FRKDGHNWKK  60
KKDGKTVKEA HEHLKVGNEE RIHVYYAHGE DNPTFVRRCY WLLDKSLEHI VLVHYRETQE  120
LQGSPATPVN SNSNSAGSDL SATWPMSEES DSAVDRVYYG STGSYLECHD SVTVKHHEQR  180
LYEINTLEWD ELLVPDDPHR LITRQQGTTA GFELQNQYQM NSYRINDDAP SNNKVSPECS  240
TNSFSEPVAG RSSINYTSPN NMSYQTVEQD TIVNSETMVS GLMPSGGAGS LYNLGKDGLQ  300
SQDSFGRWVT HIIAESPESV DDHTLESSNL AGHQSSTYPL MDSHDSSPLG PIFTITDVSP  360
AWALSTEETK ILVVGFFNEG QLPYSESKLY LACGDSLLPV DVVQAGVFRC LIPPQAPKLG  420
NLYITFDGHK PISQVLTFEI RAPVQPGTVS FENKTDWEEF QLQMRLAHLL FSSSKGLSIY  480
STKLSPTALK EAKAFAQKTS HISDGWLHMA KVIEDTKMSF PQAKDKLFEL TLQNRLQEWL  540
LEKVVAGCKI SERDEQGLGV IHLCSILGYT WAVYPYSWSG LSLDYRDKFG WTALHWAAYY  600
GREKMVATLL SAGAKPNLVT DPTSQNPGGC SAHDLASKNG YDGLAAYLAE KALVAQFDDM  660
TLAGNVSGSL QTTTNETVNP GNFSEDELYL KDTLAAYRTA ADAAARIQTA FREHSLKIRT  720
KVVESSNPEL EARNIVAAMK IQHAFRNYET RKKIVAAARI QHRFRTWKIR KEFLNMRRQA  780
IKIQAMFRGF QVRRQYRKIV WSVGVLEKAI LRWRLKRKGF RGLQVQPAET PREPNEESDV  840
EEDFFQASRK QAEERVEQSV VRVQAMFRSK QAQEAYRRMK LEHNKAKLEY EGLLHPDLQM  900
G

Functional Description ? help Back to Top
Source	Description
UniProt	Transcription activator (PubMed:14581622). Binds to the DNA consensus sequence 5'-[ACG]CGCG[GTC]-3' (By similarity). Regulates transcriptional activity in response to calcium signals (Probable). Binds calmodulin in a calcium-dependent manner (By similarity). Involved in response to cold. Contributes together with CAMTA3 to the positive regulation of the cold-induced expression of DREB1A/CBF3, DREB1B/CBF1 and DREB1C/CBF2 (PubMed:28351986). {ECO:0000250\|UniProtKB:Q8GSA7, ECO:0000269\|PubMed:14581622, ECO:0000269\|PubMed:28351986, ECO:0000305\|PubMed:11925432}.

Binding Motif ? help Back to Top
Motif ID	Method	Source	Motif file
MP00435	DAP	Transfer from AT4G16150	Download

Cis-element ? help Back to Top
Source	Link
PlantRegMap	XP_011100792.1

Regulation -- Description ? help Back to Top
Source	Description
UniProt	INDUCTION: By heat shock, UVB, wounding, abscisic acid, H(2)O(2) and salicylic acid. {ECO:0000269\|PubMed:12218065}.

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	Retrieve

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_011100788.1	0.0	calmodulin-binding transcription activator 5 isoform X1
Refseq	XP_011100789.1	0.0	calmodulin-binding transcription activator 5 isoform X1
Swissprot	O23463	0.0	CMTA5_ARATH; Calmodulin-binding transcription activator 5
TrEMBL	A0A022RYH3	0.0	A0A022RYH3_ERYGU; Uncharacterized protein
STRING	Migut.G00093.1.p	0.0	(Erythranthe guttata)

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT4G16150.1	0.0	calmodulin binding;transcription regulators

Publications ? help Back to Top
Ye J, et al. Arabidopsis formin3 directs the formation of actin cables and polarized growth in pollen tubes. Plant Cell, 2009. 21(12): p. 3868-84 [PMID:20023198] Kidokoro S, et al. Different Cold-Signaling Pathways Function in the Responses to Rapid and Gradual Decreases in Temperature. Plant Cell, 2017. 29(4): p. 760-774 [PMID:28351986] Lan Y,Liu X,Fu Y,Huang S Arabidopsis class I formins control membrane-originated actin polymerization at pollen tube tips. PLoS Genet., 2018. 14(11): p. e1007789 [PMID:30418966]