PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

XP_011099896.1

Organism

Sesamum indicum

Taxonomic ID

4182

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Lamiales; Pedaliaceae; Sesamum

Family

WOX

Protein Properties

Length: 270aa MW: 30228.8 Da PI: 5.6802

Description

WOX family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
XP_011099896.1	genome	NCBI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	Homeobox	65	1e-20	88	148	2	57
T--SS--HHHHHHHHHHHHH.SSS--HHHHHHHHHHC....TS-HHHHHHHHHHHHHHHHC CS Homeobox 2 rkRttftkeqleeLeelFek.nrypsaeereeLAkkl....gLterqVkvWFqNrRakekk 57 r+R+t+t+ ql++Le+ F + +ps+++++e++++l +++e++V++WFqNrRa+ k+ XP_011099896.1 88 RQRWTPTPMQLQILERIFDQgIGTPSKQKIKEITTELsqhgQISETNVYNWFQNRRARSKR 148 89***************99************************************97 PP
2	Wus_type_Homeobox	103.9	1e-33	88	150	3	65
Wus_type_Homeobox 3 rtRWtPtpeQikiLeelyksGlrtPnkeeiqritaeLeeyGkiedkNVfyWFQNrkaRerqkq 65 r+RWtPtp Q++iLe+++++G+ tP+k++i++it+eL+++G+i+++NV++WFQNr+aR+++kq XP_011099896.1 88 RQRWTPTPMQLQILERIFDQGIGTPSKQKIKEITTELSQHGQISETNVYNWFQNRRARSKRKQ 150 89***********************************************************97 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
Gene3D	G3DSA:1.10.10.60	2.2E-17	83	155	IPR009057	Homeodomain-like
PROSITE profile	PS50071	14.382	84	149	IPR001356	Homeobox domain
SMART	SM00389	9.0E-14	86	153	IPR001356	Homeobox domain
SuperFamily	SSF46689	2.82E-18	86	154	IPR009057	Homeodomain-like
CDD	cd00086	1.75E-12	88	150	No hit	No description
Pfam	PF00046	1.7E-18	88	148	IPR001356	Homeobox domain

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0003677	Molecular Function	DNA binding

Sequence ? help Back to Top
Protein Sequence Length: 270 aa Download sequence Send to blast
MEWEKQPPQQ AEEPSGGGGA GGGMFVKVMT DEQMEVLRKQ IAVYATICEQ LVELHKSLTS 60 QNELAGVRLG NLYCDPLITS GAHKITGRQR WTPTPMQLQI LERIFDQGIG TPSKQKIKEI 120 TTELSQHGQI SETNVYNWFQ NRRARSKRKQ QAAPANNAES EVETEVESPN EKKTKPEEFQ 180 AHHILSSRTE DLCFQTPQAS SSMHSVDPRT SKPEPVLPSE GSSKFGGSFG QIPFYGSMLP 240 NPRMDQFIGK IEVPGNYNPY LQQDDYNMDG

Nucleic Localization Signal ? help Back to Top

No.	Start	End	Sequence
1	141	149	RRARSKRKQ

Functional Description ? help Back to Top
Source	Description
UniProt	Transcription factor which may be involved in developmental processes. {ECO:0000250}.

Binding Motif ? help Back to Top
Motif ID	Method	Source	Motif file
MP00669	PBM	Transfer from GRMZM2G038252	Download

Cis-element ? help Back to Top
Source	Link
PlantRegMap	XP_011099896.1

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_011099896.1	0.0	WUSCHEL-related homeobox 8
Swissprot	Q5QMM3	4e-90	WOX8_ORYSJ; WUSCHEL-related homeobox 8
TrEMBL	A0A4D8YII2	1e-170	A0A4D8YII2_SALSN; Uncharacterized protein
STRING	Migut.H02206.1.p	1e-149	(Erythranthe guttata)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Asterids	OGEA5675	24	37

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT4G35550.1	3e-77	WUSCHEL related homeobox 13

Publications ? help Back to Top
Kikuchi S, et al. Collection, mapping, and annotation of over 28,000 cDNA clones from japonica rice. Science, 2003. 301(5631): p. 376-9 [PMID:12869764]