PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID XP_011099518.1
Organism
Sesamum indicum
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Lamiales; Pedaliaceae; Sesamum
Family NF-YC
Protein Properties Length: 271aa    MW: 30691.2 Da    PI: 6.676
Description NF-YC family protein
Gene Model
Gene Model ID Type Source Coding Sequence
XP_011099518.1genomeNCBIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1NF-YC1361e-4261163299
           NF-YC   2 lksfwekq....iekatdfk.nhelPlarikkilkadedvkmisaeaPvllskacelfileltlrswlhaeenkrrtlkksdiaaavtrtdifdf 91 
                     ++ fw ++     +  td++ +h+lPlarikk++k+de+vkmisa++Pv+++kace+fi+eltlr+w+h++enkrrtl+++d+a+a+   d   f
  XP_011099518.1  61 IQGFWRERlaeiCDAPTDVRaQHTLPLARIKKVMKSDEQVKMISADTPVVFAKACEMFIMELTLRAWMHTQENKRRTLQRNDVANAIRDEDLLSF 155
                     6789999866656677899889************************************************************************* PP

           NF-YC  92 lvdivprd 99 
                     l divp +
  XP_011099518.1 156 LKDIVPME 163
                     *****987 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF471131.11E-2864171IPR009072Histone-fold
Gene3DG3DSA:1.10.20.101.4E-3480148IPR009072Histone-fold
PfamPF008087.5E-2084147IPR003958Transcription factor CBF/NF-Y/archaeal histone domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0046982Molecular Functionprotein heterodimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 271 aa     Download sequence    Send to blast
MNNSSEKTIM DFNQSMEFSS TSNPPLQMHN FMPMPTPTPH GSHQVEEVVN SCFINQLKQN  60
IQGFWRERLA EICDAPTDVR AQHTLPLARI KKVMKSDEQV KMISADTPVV FAKACEMFIM  120
ELTLRAWMHT QENKRRTLQR NDVANAIRDE DLLSFLKDIV PMEIQQEDPL SLANHLGVYV  180
PQPYPGMPIN PVYPMNAQNI YRAVPTVGRP VAIDHPLGFA MNLQHNINPA FFIRNQEMQQ  240
GTTTPAPAPA PPPPPPATGA NPFHDFKHFM Q
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
5g49_B5e-36831611694NUCLEAR TRANSCRIPTION FACTOR Y SUBUNIT C-3
Search in ModeBase
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1134140RRTLQRN
Cis-element ? help Back to Top
SourceLink
PlantRegMapXP_011099518.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_011099518.10.0nuclear transcription factor Y subunit C-3-like isoform X1
RefseqXP_011099519.10.0nuclear transcription factor Y subunit C-3-like isoform X1
TrEMBLA0A2G9GG332e-95A0A2G9GG33_9LAMI; CCAAT-binding factor, subunit C (HAP5)
STRINGEOY040853e-50(Theobroma cacao)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
AsteridsOGEA1762144
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G56170.25e-42nuclear factor Y, subunit C2