PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

XP_011097215.1

Organism

Sesamum indicum

Taxonomic ID

4182

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Lamiales; Pedaliaceae; Sesamum

Family

bZIP

Protein Properties

Length: 292aa MW: 30975.9 Da PI: 5.9821

Description

bZIP family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
XP_011097215.1	genome	NCBI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	bZIP_1	80.6	1.8e-25	194	256	1	63
XXXXCHHHCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH CS bZIP_1 1 ekelkrerrkqkNReAArrsRqRKkaeieeLeekvkeLeaeNkaLkkeleelkkevaklksev 63 e+elkr++rkq+NRe+ArrsR+RK+ae+eeL+ +v++L++eN++L++el++l++e++kl+se+ XP_011097215.1 194 ERELKRQKRKQSNRESARRSRLRKQAECEELQHRVETLSNENHTLRDELQRLSEECEKLTSEN 256 89***********************************************************98 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
Pfam	PF07777	8.3E-7	1	25	IPR012900	G-box binding protein, multifunctional mosaic region
Pfam	PF16596	3.1E-11	47	160	No hit	No description
PRINTS	PR00041	1.3E-5	98	120	IPR001630	cAMP response element binding (CREB) protein
Gene3D	G3DSA:1.20.5.170	7.5E-21	189	253	No hit	No description
PRINTS	PR00041	1.3E-5	193	209	IPR001630	cAMP response element binding (CREB) protein
Pfam	PF00170	8.4E-23	194	256	IPR004827	Basic-leucine zipper domain
SMART	SM00338	4.4E-24	194	258	IPR004827	Basic-leucine zipper domain
PROSITE profile	PS50217	13.541	196	259	IPR004827	Basic-leucine zipper domain
SuperFamily	SSF57959	1.05E-12	197	253	No hit	No description
CDD	cd14702	1.31E-25	199	249	No hit	No description
PROSITE pattern	PS00036	0	201	216	IPR004827	Basic-leucine zipper domain
PRINTS	PR00041	1.3E-5	211	231	IPR001630	cAMP response element binding (CREB) protein
PRINTS	PR00041	1.3E-5	231	248	IPR001630	cAMP response element binding (CREB) protein

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0006355	Biological Process	regulation of transcription, DNA-templated
GO:0010310	Biological Process	regulation of hydrogen peroxide metabolic process
GO:0010629	Biological Process	negative regulation of gene expression
GO:0090342	Biological Process	regulation of cell aging
GO:0005634	Cellular Component	nucleus
GO:0005737	Cellular Component	cytoplasm
GO:0003700	Molecular Function	transcription factor activity, sequence-specific DNA binding
GO:0043565	Molecular Function	sequence-specific DNA binding
GO:0044212	Molecular Function	transcription regulatory region DNA binding

Sequence ? help Back to Top
Protein Sequence Length: 292 aa Download sequence Send to blast
MPPYGTPVPY PALYPPGGVY AHPNMATAPS AVHGTGELDG KATEGKDRAS SKKTKGASGN 60 HVMIVGKTGD GGKAASGSGN DVGTQSAESG SEGSSDASDD NNNQESSATK KGSFDQMLAD 120 GANAQNNGVP TNFQTSVPGN PVVSVPATNL NIGMDLWNAS PAGSGAMKLR PNQPGVSPTI 180 APPGMINDQW IQDERELKRQ KRKQSNRESA RRSRLRKQAE CEELQHRVET LSNENHTLRD 240 ELQRLSEECE KLTSENNSIK EELTKLCGPD ILSKLENSNG THPQSRGDEG NC

Nucleic Localization Signal ? help Back to Top

No.	Start	End	Sequence
1	210	216	RRSRLRK
2	210	217	RRSRLRKQ

Functional Description ? help Back to Top
Source	Description
UniProt	Binds to the G-box motif (5'-CCACGTGG-3') of the rbcS-1A gene promoter (PubMed:1373374). G-box and G-box-like motifs are cis-acting elements defined in promoters of certain plant genes which are regulated by such diverse stimuli as light-induction or hormone control. Binds to the G-box motif 5'-CACGTG-3' of LHCB2.4 (At3g27690) promoter. May act as transcriptional activator in light-regulated expression of LHCB2.4. Probably binds DNA as monomer. DNA-binding activity is redox-dependent (PubMed:22718771). {ECO:0000269\|PubMed:1373374, ECO:0000269\|PubMed:22718771}.

Binding Motif ? help Back to Top
Motif ID	Method	Source	Motif file
MP00039	PBM	Transfer from AT4G36730	Download

Cis-element ? help Back to Top
Source	Link
PlantRegMap	XP_011097215.1

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	Retrieve

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_011097214.1	0.0	G-box-binding factor 1-like isoform X1
Refseq	XP_011097215.1	0.0	G-box-binding factor 1-like isoform X2
Swissprot	P42774	4e-76	GBF1_ARATH; G-box-binding factor 1
TrEMBL	A0A2G9I437	1e-175	A0A2G9I437_9LAMI; Uncharacterized protein
STRING	XP_009803268.1	1e-133	(Nicotiana sylvestris)

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT4G36730.2	7e-69	G-box binding factor 1

Publications ? help Back to Top
Gangappa SN,Srivastava AK,Maurya JP,Ram H,Chattopadhyay S Z-box binding transcription factors (ZBFs): a new class of transcription factors in Arabidopsis seedling development. Mol Plant, 2013. 6(6): p. 1758-68 [PMID:24157607] Ding Y, et al. Four distinct types of dehydration stress memory genes in Arabidopsis thaliana. BMC Plant Biol., 2013. 13: p. 229 [PMID:24377444] Karumuri S,Bandopadhyay R In silico analysis of the structure and interaction of COP1 protein of Arabidopsis thaliana. Indian J. Biochem. Biophys., 2014. 51(5): p. 343-9 [PMID:25630103] Smykowski A,Zimmermann P,Zentgraf U CORRECTION. G-Box Binding Factor1 Reduces CATALASE2 Expression and Regulates the Onset of Leaf Senescence in Arabidopsis. Plant Physiol., 2016. 170(2): p. 1164-7 [PMID:26826725] Smykowski A,Fischer SM,Zentgraf U Phosphorylation Affects DNA-Binding of the Senescence-Regulating bZIP Transcription Factor GBF1. Plants (Basel), 2015. 4(3): p. 691-709 [PMID:27135347] Giri MK, et al. GBF1 differentially regulates CAT2 and PAD4 transcription to promote pathogen defense in Arabidopsis thaliana. Plant J., 2017. 91(5): p. 802-815 [PMID:28622438]