PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
|
Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
---|---|---|---|---|---|---|---|---|---|
TF ID | XP_011094569.1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Lamiales; Pedaliaceae; Sesamum
|
||||||||
Family | LBD | ||||||||
Protein Properties | Length: 161aa MW: 16403.5 Da PI: 8.0729 | ||||||||
Description | LBD family protein | ||||||||
Gene Model |
|
Signature Domain? help Back to Top | |||||||
---|---|---|---|---|---|---|---|
No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | DUF260 | 129.1 | 1.9e-40 | 36 | 136 | 1 | 100 |
DUF260 1 aCaaCkvlrrkCakdCvlapyfpaeq.pkkfanvhklFGasnvlkllkalpeeeredamsslvyeAearardPvyGavgvilklqqqleqlkael 94 +C aCk+lrrkC+++C++apyf +eq +++fa+vhk+FGasnv+kll+++p ++r da+ +++yeA+ r+rdP+yG+v++i++lqqq+ +l++el XP_011094569.1 36 PCGACKFLRRKCVAGCIFAPYFDSEQgAAHFAAVHKVFGASNVSKLLHHIPVQKRLDAVVTICYEAQSRLRDPIYGCVAHIFALQQQVVNLQTEL 130 7***********************9989******************************************************************* PP DUF260 95 allkee 100 ++l+++ XP_011094569.1 131 SYLQAH 136 *99986 PP |
Protein Features ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Database | Entry ID | E-value | Start | End | InterPro ID | Description |
PROSITE profile | PS50891 | 22.904 | 35 | 137 | IPR004883 | Lateral organ boundaries, LOB |
Pfam | PF03195 | 2.9E-39 | 36 | 134 | IPR004883 | Lateral organ boundaries, LOB |
Sequence ? help Back to Top |
---|
Protein Sequence Length: 161 aa Download sequence Send to blast |
MSTTAKVGGS STAAGGGGSS SGSGGGGGGG GGGGGPCGAC KFLRRKCVAG CIFAPYFDSE 60 QGAAHFAAVH KVFGASNVSK LLHHIPVQKR LDAVVTICYE AQSRLRDPIY GCVAHIFALQ 120 QQVVNLQTEL SYLQAHLAAL ELPTPPPATP QHQPQPCESE S |
3D Structure ? help Back to Top | ||||||
---|---|---|---|---|---|---|
PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
5ly0_A | 3e-38 | 32 | 137 | 7 | 111 | LOB family transfactor Ramosa2.1 |
5ly0_B | 3e-38 | 32 | 137 | 7 | 111 | LOB family transfactor Ramosa2.1 |
Search in ModeBase |
Functional Description ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Source | Description | |||||
UniProt | Involved in the positive regulation of tracheary element (TE) differentiation. Involved in a positive feedback loop that maintains or promotes NAC030/VND7 expression that regulates TE differentiation-related genes. {ECO:0000269|PubMed:19088331}. |
Cis-element ? help Back to Top | |
---|---|
Source | Link |
PlantRegMap | XP_011094569.1 |
Regulation -- PlantRegMap ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Protein ? help Back to Top | |||||||
---|---|---|---|---|---|---|---|
Source | Hit ID | E-value | Description | ||||
Refseq | XP_011094569.1 | 1e-113 | LOB domain-containing protein 18 | ||||
Swissprot | O81323 | 3e-63 | LBD30_ARATH; LOB domain-containing protein 30 | ||||
TrEMBL | A0A2G9I206 | 2e-68 | A0A2G9I206_9LAMI; Uncharacterized protein | ||||
STRING | XP_009795320.1 | 4e-68 | (Nicotiana sylvestris) | ||||
STRING | XP_009604912.1 | 4e-68 | (Nicotiana tomentosiformis) | ||||
STRING | GSMUA_Achr5P11330_001 | 2e-68 | (Musa acuminata) | ||||
STRING | XP_010508173.1 | 3e-68 | (Camelina sativa) |
Orthologous Group ? help Back to Top | |||
---|---|---|---|
Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Asterids | OGEA43 | 24 | 669 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Hit ID | E-value | Description | ||||
AT4G00220.1 | 1e-60 | LBD family protein |
Publications ? help Back to Top | |||
---|---|---|---|
|