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PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | XP_011093009.1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Lamiales; Pedaliaceae; Sesamum
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Family | HD-ZIP | ||||||||
Protein Properties | Length: 230aa MW: 26469.8 Da PI: 4.7078 | ||||||||
Description | HD-ZIP family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | Homeobox | 63.9 | 2.2e-20 | 24 | 78 | 2 | 56 |
T--SS--HHHHHHHHHHHHHSSS--HHHHHHHHHHCTS-HHHHHHHHHHHHHHHH CS Homeobox 2 rkRttftkeqleeLeelFeknrypsaeereeLAkklgLterqVkvWFqNrRakek 56 +++++f++eq++ Le +Fe+++++ +++++LA++lgL+ rqV +WFqN+Ra++k XP_011093009.1 24 KNKRRFSDEQIRSLEVMFESESKLEPKKKAQLANELGLQPRQVAIWFQNKRARWK 78 56779*************************************************9 PP | |||||||
2 | HD-ZIP_I/II | 116.4 | 1.6e-37 | 25 | 116 | 2 | 93 |
HD-ZIP_I/II 2 kkrrlskeqvklLEesFeeeekLeperKvelareLglqprqvavWFqnrRARtktkqlEkdyeaLkraydalkeenerLekeveeLreelke 93 +krr+s+eq+++LE +Fe+e+kLep++K++la+eLglqprqva+WFqn+RAR+k+k++Ek+y+ L ++y++l+++ e+L++++++L +l++ XP_011093009.1 25 NKRRFSDEQIRSLEVMFESESKLEPKKKAQLANELGLQPRQVAIWFQNKRARWKSKHMEKEYAILLANYNNLASQVEALKEQNQSLLIKLQK 116 79************************************************************************************988876 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
SuperFamily | SSF46689 | 5.72E-19 | 6 | 80 | IPR009057 | Homeodomain-like |
PROSITE profile | PS50071 | 17.896 | 20 | 80 | IPR001356 | Homeobox domain |
SMART | SM00389 | 7.7E-18 | 22 | 84 | IPR001356 | Homeobox domain |
Pfam | PF00046 | 1.0E-17 | 24 | 78 | IPR001356 | Homeobox domain |
Gene3D | G3DSA:1.10.10.60 | 1.4E-19 | 25 | 86 | IPR009057 | Homeodomain-like |
CDD | cd00086 | 1.96E-15 | 27 | 81 | No hit | No description |
PRINTS | PR00031 | 4.7E-6 | 51 | 60 | IPR000047 | Helix-turn-helix motif |
PROSITE pattern | PS00027 | 0 | 55 | 78 | IPR017970 | Homeobox, conserved site |
PRINTS | PR00031 | 4.7E-6 | 60 | 76 | IPR000047 | Helix-turn-helix motif |
Pfam | PF02183 | 2.0E-11 | 80 | 121 | IPR003106 | Leucine zipper, homeobox-associated |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0009414 | Biological Process | response to water deprivation | ||||
GO:0009738 | Biological Process | abscisic acid-activated signaling pathway | ||||
GO:0045893 | Biological Process | positive regulation of transcription, DNA-templated | ||||
GO:0003700 | Molecular Function | transcription factor activity, sequence-specific DNA binding | ||||
GO:0043565 | Molecular Function | sequence-specific DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 230 aa Download sequence Send to blast |
MMSDWMENSC VGNLNTMAKK KKIKNKRRFS DEQIRSLEVM FESESKLEPK KKAQLANELG 60 LQPRQVAIWF QNKRARWKSK HMEKEYAILL ANYNNLASQV EALKEQNQSL LIKLQKLKNE 120 MMGKSEGQIQ EIARKGITDD DGESDHTKIQ LSEVTNVGTR SLEEILSDDD SSIRPVLFGL 180 DEENELLKLV EPAAADSSLT SAEDWGSLDS DDLINQPTDH DCYQWWDFWS |
Functional Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | Probable transcription activator that may act as growth regulators in response to water deficit. {ECO:0000269|PubMed:15604708, ECO:0000269|PubMed:8771791}. |
Binding Motif ? help Back to Top | |||
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Motif ID | Method | Source | Motif file |
MP00320 | DAP | Transfer from AT2G46680 | Download |
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Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | XP_011093009.1 |
Regulation -- Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | INDUCTION: By water deficit, by abscisic acid (ABA) and by salt stress. {ECO:0000269|PubMed:16055682, ECO:0000269|PubMed:8771791}. |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | Retrieve |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_011093009.1 | 1e-168 | homeobox-leucine zipper protein ATHB-12 | ||||
Swissprot | P46897 | 5e-52 | ATHB7_ARATH; Homeobox-leucine zipper protein ATHB-7 | ||||
TrEMBL | A0A2G9H743 | 8e-93 | A0A2G9H743_9LAMI; Transcription factor HEX | ||||
STRING | XP_010559143.1 | 5e-73 | (Tarenaya hassleriana) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Asterids | OGEA2041 | 23 | 63 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT3G61890.1 | 9e-50 | homeobox 12 |
Publications ? help Back to Top | |||
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