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PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | XP_011090100.1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Lamiales; Pedaliaceae; Sesamum
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Family | MYB | ||||||||
Protein Properties | Length: 340aa MW: 38442.9 Da PI: 6.5856 | ||||||||
Description | MYB family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | Myb_DNA-binding | 49.5 | 9.7e-16 | 14 | 62 | 1 | 48 |
TSSS-HHHHHHHHHHHHHTTTT.-HHHHHHHHTTTS-HHHHHHHHHHHT CS Myb_DNA-binding 1 rgrWTteEdellvdavkqlGgg.tWktIartmgkgRtlkqcksrwqkyl 48 +g+W++eEd +l++ ++++G+g +W + +++ g++R++k+c++rw++yl XP_011090100.1 14 KGPWSPEEDAKLKEFIEKFGTGgNWIALPQKAGLKRCGKSCRLRWLNYL 62 79*********************************************97 PP | |||||||
2 | Myb_DNA-binding | 38 | 3.8e-12 | 69 | 111 | 2 | 46 |
SSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHH CS Myb_DNA-binding 2 grWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqk 46 g ++ eEd ++ + + G++ W+ Ia+ ++ gRt++++k++w++ XP_011090100.1 69 GEFSDEEDRIICTLYASIGSR-WSIIAAQLP-GRTDNDIKNYWNT 111 789******************.*********.***********97 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
PROSITE profile | PS51294 | 14.342 | 9 | 62 | IPR017930 | Myb domain |
SuperFamily | SSF46689 | 2.86E-27 | 11 | 109 | IPR009057 | Homeodomain-like |
SMART | SM00717 | 1.8E-12 | 13 | 64 | IPR001005 | SANT/Myb domain |
Pfam | PF00249 | 4.5E-15 | 14 | 62 | IPR001005 | SANT/Myb domain |
Gene3D | G3DSA:1.10.10.60 | 3.2E-24 | 15 | 69 | IPR009057 | Homeodomain-like |
CDD | cd00167 | 1.68E-9 | 16 | 62 | No hit | No description |
PROSITE profile | PS51294 | 22.418 | 63 | 117 | IPR017930 | Myb domain |
SMART | SM00717 | 3.5E-12 | 67 | 115 | IPR001005 | SANT/Myb domain |
Pfam | PF00249 | 7.7E-11 | 69 | 111 | IPR001005 | SANT/Myb domain |
CDD | cd00167 | 1.23E-8 | 70 | 113 | No hit | No description |
Gene3D | G3DSA:1.10.10.60 | 9.6E-24 | 70 | 118 | IPR009057 | Homeodomain-like |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0003677 | Molecular Function | DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 340 aa Download sequence Send to blast |
MGRAPCCDKA NVKKGPWSPE EDAKLKEFIE KFGTGGNWIA LPQKAGLKRC GKSCRLRWLN 60 YLRPNIKHGE FSDEEDRIIC TLYASIGSRW SIIAAQLPGR TDNDIKNYWN TKLKKKLIMG 120 LNPSNLGKFS QPFSASLQTQ PQPLSSDLLQ LYRDYNSLCF QAAKSVSAVE SFSGPQNFLH 180 CNSDNLSFLS TSQCSINYQQ NQEGLVDLQY YDPGKDNVNM LVFGGNEASC SSSDGSCCQI 240 SYGKEQVIKQ EDQMGCLHRD FHVEESQKFM LHYGQYVDGD QHHHHGDPFS VFLDERANGV 300 LGSNSQYLEQ VKQLISSGNG NSFLFNDENK TDERGMYYYY |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
1a5j_A | 5e-28 | 14 | 117 | 7 | 108 | B-MYB |
Search in ModeBase |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | XP_011090100.1 |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_011090100.1 | 0.0 | transcription factor RAX2-like | ||||
TrEMBL | A0A2G9HTG3 | 1e-132 | A0A2G9HTG3_9LAMI; Transcription factor, Myb superfamily | ||||
STRING | Migut.N02569.1.p | 1e-112 | (Erythranthe guttata) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Asterids | OGEA12 | 24 | 2154 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT5G57620.1 | 9e-78 | myb domain protein 36 |