PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

XP_011090048.1

Organism

Sesamum indicum

Taxonomic ID

4182

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Lamiales; Pedaliaceae; Sesamum

Family

NAC

Protein Properties

Length: 430aa MW: 48769.8 Da PI: 8.6159

Description

NAC family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
XP_011090048.1	genome	NCBI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	NAM	152.2	2.5e-47	15	141	2	128
NAM 2 ppGfrFhPtdeelvveyLkkkvegkkleleevikevdiykvePwdLpkkvkaeekewyfFskrdkkyatgkrknratksgyWkatgkdkevlsk. 95 ppG+rFhP+deel+++yL++kv++ +l++ ++i+++++y+++PwdLp++ ++ kewyfF++rd+ky++g r+nr+++sgyWkatg dk++ls+ XP_011090048.1 15 PPGIRFHPSDEELITYYLQRKVKSLPLPA-DMITDIELYSYNPWDLPRNSLSGGKEWYFFTPRDRKYPNGGRPNRTAASGYWKATGIDKPILSSt 108 9**************************.99***********7777889**********************************997 PP NAM 96 kgelvglkktLvfykgrapkgektdWvmheyrl 128 +++ +g+k+ Lvfykg+ pkg k dW m eyrl XP_011090048.1 109 GSRRIGVKRDLVFYKGKPPKGLKMDWAMTEYRL 141 7888*************************98 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
SuperFamily	SSF101941	2.88E-56	10	167	IPR003441	NAC domain
PROSITE profile	PS51005	55.948	14	167	IPR003441	NAC domain
Pfam	PF02365	6.6E-24	15	141	IPR003441	NAC domain

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0006355	Biological Process	regulation of transcription, DNA-templated
GO:0003677	Molecular Function	DNA binding

Sequence ? help Back to Top
Protein Sequence Length: 430 aa Download sequence Send to blast
MGESPIPNIQ YIQYPPGIRF HPSDEELITY YLQRKVKSLP LPADMITDIE LYSYNPWDLP 60 RNSLSGGKEW YFFTPRDRKY PNGGRPNRTA ASGYWKATGI DKPILSSTGS RRIGVKRDLV 120 FYKGKPPKGL KMDWAMTEYR LPDATRTLSS KGSMRLDDWV LCRLKQKGNT SKNAHEDDQN 180 SDEFLEYLPK IEELPSVYTE NSADMLENNM ISSEYHLIDS SLVGHDPGVA TIPRTTFQSH 240 GSGNSSTTIC EPISGKWNTQ TTFSLFQSFS GSVPGKLMEE NRCTNIQQPT NMIINEQTPV 300 ASRSGQVVAT TGTNSYHQHV SEVFLEAASD SFFRCRRNQT KLTPSTRNQK SELIQEHGNE 360 GCGVSYVRAF LFLRNMKWNQ LGLALTNNSK NEYNWNHNTG WIVKDYKARN AEANLLHGVL 420 HMGELEKSPK

Sequence ? help Back to Top

Protein Sequence Length: 430 aa Download sequence Send to blast

MGESPIPNIQ YIQYPPGIRF HPSDEELITY YLQRKVKSLP LPADMITDIE LYSYNPWDLP  60
RNSLSGGKEW YFFTPRDRKY PNGGRPNRTA ASGYWKATGI DKPILSSTGS RRIGVKRDLV  120
FYKGKPPKGL KMDWAMTEYR LPDATRTLSS KGSMRLDDWV LCRLKQKGNT SKNAHEDDQN  180
SDEFLEYLPK IEELPSVYTE NSADMLENNM ISSEYHLIDS SLVGHDPGVA TIPRTTFQSH  240
GSGNSSTTIC EPISGKWNTQ TTFSLFQSFS GSVPGKLMEE NRCTNIQQPT NMIINEQTPV  300
ASRSGQVVAT TGTNSYHQHV SEVFLEAASD SFFRCRRNQT KLTPSTRNQK SELIQEHGNE  360
GCGVSYVRAF LFLRNMKWNQ LGLALTNNSK NEYNWNHNTG WIVKDYKARN AEANLLHGVL  420
HMGELEKSPK

3D Structure ? help Back to Top

PDB ID	Evalue	Query Start	Query End	Hit Start	Hit End	Description
3ulx_A	3e-58	12	169	13	170	Stress-induced transcription factor NAC1
Search in ModeBase

Functional Description ? help Back to Top
Source	Description
UniProt	Transcription factor of the NAC family associated with the grain protein content (GPC). Accelerates senescence and increases nutrient remobilization from leaves to developing grains. The tetraploid cultivated wheat (T.durum) contains one additional gene coding for a functional protein (NAM-A1) and one extra pseudogene (NAM-B1) (PubMed:17124321). Plays a weaker role in terminal senescence than NAM-A1. {ECO:0000269\|PubMed:17124321, ECO:0000269\|PubMed:22278768}.

Cis-element ? help Back to Top
Source	Link
PlantRegMap	XP_011090048.1

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_020552291.1	0.0	NAC domain-containing protein 18-like isoform X2
Swissprot	A0SPJ6	4e-67	NAMB2_TRITD; NAC transcription factor NAM-B2
TrEMBL	A0A2G9H970	1e-120	A0A2G9H970_9LAMI; Uncharacterized protein
STRING	Migut.D02201.1.p	1e-110	(Erythranthe guttata)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Asterids	OGEA13390	11	17

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT3G15510.1	5e-68	NAC domain containing protein 2

Publications ? help Back to Top
Uauy C,Distelfeld A,Fahima T,Blechl A,Dubcovsky J A NAC Gene regulating senescence improves grain protein, zinc, and iron content in wheat. Science, 2006. 314(5803): p. 1298-301 [PMID:17124321]