PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID XP_011089889.1
Organism
Sesamum indicum
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Lamiales; Pedaliaceae; Sesamum
Family NF-YC
Protein Properties Length: 231aa    MW: 26727 Da    PI: 10.2444
Description NF-YC family protein
Gene Model
Gene Model ID Type Source Coding Sequence
XP_011089889.1genomeNCBIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1NF-YC32.81.5e-101282161199
           NF-YC  11 ekatdfknhelPlarikkilkadedvkmisaeaPvllskacelfileltlrswlhaeenkrrtlkksdiaaavtrtdifdflvdivprd 99 
                     e++ + +  ++P+ r+ +i+k+++   +is ea  l+ +a e f+  +   ++  +   +++    + ++++v++ + fdfl d +p++
  XP_011089889.1 128 EEKRENALYRFPMNRVSRIIKSENSDLRISQEAVFLINRASEKFLQLFCREAYACTFLDRKNYTAYNHLSSVVSKRKRFDFLSDFIPEK 216
                     5555666779***************9******************765555677777777777778999******************986 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PfamPF008081.8E-11137200IPR003958Transcription factor CBF/NF-Y/archaeal histone domain
SuperFamilySSF471138.38E-15138214IPR009072Histone-fold
Gene3DG3DSA:1.10.20.105.0E-19138215IPR009072Histone-fold
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0046982Molecular Functionprotein heterodimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 231 aa     Download sequence    Send to blast
MAKKQVPAER TRKKNNSKIH IKSKSKNKSR NFTTQNKSRN KIRKTANDDA SSEETEVLVV  60
PSSSTESQND EVVGSSEEAE EDDVSERSPS DEDEKEEKKK PKSIKKKGKR KDVKNKGKRR  120
SRKAAEEEEK RENALYRFPM NRVSRIIKSE NSDLRISQEA VFLINRASEK FLQLFCREAY  180
ACTFLDRKNY TAYNHLSSVV SKRKRFDFLS DFIPEKLKAE DALAENPEAE K
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1104119KKKGKRKDVKNKGKRR
Cis-element ? help Back to Top
SourceLink
PlantRegMapXP_011089889.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_011089889.11e-164protein MNN4 isoform X1
TrEMBLA0A2G9IAE26e-88A0A2G9IAE2_9LAMI; DNA-directed DNA polymerase
STRINGMigut.N02608.1.p2e-61(Erythranthe guttata)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
AsteridsOGEA93041415
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G07980.13e-30nuclear factor Y, subunit C10